RNA id: XR_005051392.1


Basic Information

Item Value
RNA id XR_005051392.1
length 4358
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC110520643
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80308419 ~ 80335869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAATGGTATGATTTCCCAGAATGGACCATCAAAACGTTTCACTTTCATTTTGCTTTACATGAAAGGTGATAGACTCAAGCTGTAGACCTATACTGCTCTGTGACCCTGACTCAAGCTGTAGACCTATACTGCTCTGTGACCCTGACTCAAGCTGTAGACCTATACTGCTCTGTGACCCTGACTCAAGCTGTAGACCTATACTGCTCTGTGACCCTGACTCAAGCTGTAGACCTATACTGCTCTGTGACCCTGACTCAAGCTGTAGACCTATACTGCTCTGTGACCCTGACTCAACACACAACCTGCTTGTCTGAAAGTGTCAACGATTTCCAAaggaagagagacatgtCTTATGATGATGGACCGAGTATGTTCCAAGACCAGCTGGCGGAGAAGGTCCGGCCCTTCATAGACTTAATAGACGACATGAGATCCATAGGGATAGATAAGGAGCTGCCACTGCCAACCATTGCTGTGGTGGGAGACCAGAGTTCAGGAAAGAGCTCTGTGCTTGAGACCCTATCTGGGGTGGCGCTGCCCAGAGGGACTGGTATTGTCACCAGGTGCCCACTGCTACTTAAACTCTGTAACGACAGGACAGTGAAATGGGATGCTGTCATCTCATACGGAGGGAAAATCATTGAATTTGACGAACCTTCAGAAGTAGTTAGACATGTTGAACAAGCTCAGAACACGTTAGCTGGAAAGGGAGTGGGGATATGTGAAGACCTGATCACTCTAAAGATCACATCCTCCACGGTGTGTGACCTCAGTCTGATTGACTTACCAGGGATCACCAGGGTGGCAGTGAAAGGACAACCAGAAGACATTGGAGTCCAAATCAATAATCTCATTTCGGAATTCATAAAGAATAAGATAACCATTATTTTGGCGGTGGTACCATGTAATGTTGACATAGCAACAACAGAGGCTCTGAAAATGGCACAACAAGTGGATCCTGAAGGCACAAGAACTCTGGCCATTCTGACAAAGCCAGACCTGATAGACCCGGGAGCAGAGAAGAATGTGTTGGAAATTGTCCACAATAGAGTCATATTTCTCAGTATGGGCTATGTCATTGTGAAATGTCGTGGTCAAAAGCAAATTGATGAAAACATGTCAATAACCCGTGCGATTGAGGAGGAGTTGGAATTCTTCCAAAATCACGAGCACTTCAGATCCCTCGTGCGTGAGGAGAAGGCAACCACCAAGTGCCTAGCCAAAAAGCTCACCAATGCCCTGGTCAAACAGATCAAGACATATCTGCCCCAGATGTCAGAGAAGATAAAGGAGCAGCTGGGGGAGGTAAAGAATTCGTTGAGTAAATTAGAGGGCGGGCCTCCCCTTGAACCTGAAGAGAAGAGGAAGTACCTCATTCAGGTCATAACAGATTTCAATGAGCAGATTACCCAACTGTCCAAAGGGGATATTATCGTTGAAGAGAATCTGTTTGTTCTCATGCGAAAGGAATTTACACAGTGGATGAAATGTTTGGAAAATGACAAATCAAACTACCACAAAGTAGTGCAACAAGTGGTGGATGAATATGATCAGGAGCACAGGGGAAGTGAGCTGCCAGGATTCAGTAACTACAGGGTATTTCAACATGTTGTTCAGAAACTAGTGGCTGAACTTAAGAGACCAGCTATGTCGACACTACAGAAAATCAGAGACATGGTGCAAAAGCAATTTGATCATTTGTCCAGCGAGAGCTTTAAGAATTATCCTTATCTTCATCTGGTCTCAAAGAAAAACATTGAAACAATCCAGGAAAAGCAGTCAAACATTGTGAAGGAGAGGATCGTGGAGCAGTTTGAGATGGAGATGCAGGTCTACACACAGGATGAAATCTTCAACAAAGTTATGCTAGAGGCGAAATCACATATTCTAGAGGAGGGGGAAATAGCAGAAGACAAAGAGCAAGACACCAGGAGCAAGTACCCTGGGCTGCTCAAGGCATACTATGAGATTGTGGTGCAAAGACTGGCTGACCAGGTGCCCATGATGATCTGTTACTTCATCCTGAAGCAGTCAGCCAAGATTGTGTGCAGTGAAATGCTGGATCTGTTACACAGAGACGACACTGATAACATCCTACAGGAGGATTCAGAGATCGGACAGTATCGTGCAAAGTTGCAGGCCCAAGCGGATCGCCTCATACTGGCCAATGACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGTAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTTTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGTAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGTAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGTAGGTGATGTCTTGTCATTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGTAGGTGATGTCTTGTCAGTTAAAAAATCAGCATCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATATCTTGTCAGTTACAAAATCAGCATCCTCTGAGTAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGTAGGTGATGTCTTTTCAGTTACAAAATCAGCAGCCTCTGAGTAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGTAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGTAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAATATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAATATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGTAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGAAGGTGATGTCTTGTCAGTTACAATATCAGCATCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCATCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAATATCAGCAGCCTCTGAGAAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGTAGGTGATGTCTTGTCAGTTACAAAATCAGCAGCCTCTGAGAAGggACCAAGCGGATCGTCTTTGACTGGCCAATGACAAGCGGATCACCTTGGACTGGCCAATGACAAGATTAGTAGACTGTGGTTGACAATTTGTCATTGCAGAAATTCTGAGATGGTGCCAACAAAGCAATAATTATACCTACATTTTATCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU342905 lncRNA downstream 624 80306493 ~ 80307795 (-) True G302287
TU342844 lncRNA downstream 9417 80298798 ~ 80299002 (-) True G302243
TU342843 lncRNA downstream 10234 80296153 ~ 80298185 (-) True G302242
TU342838 lncRNA downstream 12397 80295581 ~ 80296022 (-) True G302241
TU342833 lncRNA downstream 13204 80294986 ~ 80295215 (-) True G302238
TU342957 lncRNA upstream 63324 80399193 ~ 80399467 (-) True G302325
TU343002 lncRNA upstream 66998 80402867 ~ 80420008 (-) False LOC110520645
TU343004 lncRNA upstream 73633 80409502 ~ 80412973 (-) True G302352
TU343008 lncRNA upstream 88840 80424709 ~ 80425066 (-) True G302356
TU343010 lncRNA upstream 90793 80426662 ~ 80427525 (-) True G302358
XM_036975302.1 mRNA downstream 59952 80007885 ~ 80248467 (-) True LOC110504879
XM_036975312.1 mRNA downstream 320792 79972629 ~ 79987627 (-) False LOC110505446
XM_036975292.1 mRNA downstream 2067235 78235039 ~ 78241184 (-) False LOC110520639
XM_036975322.1 mRNA upstream 81080 80416949 ~ 80421159 (-) False LOC110520645
XM_021598066.2 mRNA upstream 81080 80416949 ~ 80421217 (-) False LOC110520645
XR_005051394.1 mRNA upstream 81080 80416949 ~ 80421217 (-) False LOC110520645
XM_036975321.1 mRNA upstream 81080 80416949 ~ 80421221 (-) False LOC110520645
XM_021598068.2 mRNA upstream 92922 80428791 ~ 80432982 (-) True LOC110520647
TU342692 other downstream 257134 80049621 ~ 80051285 (-) True G302117
TU342471 other downstream 363985 79944051 ~ 79944434 (-) True G301928
TU341971 other downstream 857449 79450708 ~ 79450970 (-) True G301453
TU341970 other downstream 857947 79450088 ~ 79450472 (-) True G301452
TU341784 other downstream 1017481 79103349 ~ 79290938 (-) True G301283
TU343001 other upstream 83481 80419350 ~ 80421145 (-) True LOC110520645
TU343054 other upstream 172066 80507935 ~ 80508297 (-) True G302399
TU343413 other upstream 345117 80680986 ~ 80683186 (-) True G302660
TU343484 other upstream 384848 80720717 ~ 80721681 (-) True G302724
TU343486 other upstream 385869 80721738 ~ 80722623 (-) True G302725

Expression Profile