RNA id: XM_021598068.2


Basic Information

Item Value
RNA id XM_021598068.2
length 1795
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC110520647
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80428791 ~ 80432982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accTGCAGTCTCTCAAATCATCTAGATCTCTGCCAGTCCACCACCATGTACCTgaacctcctcatcctcctccaacTCCTTTCCTCTGCTGGAGCCTCTGAGAGTGGTATTGTGGGTGGTAAGATAGCTAAGCCCCACTCAAGGCCCTATATGGTCTCTCTGCAACACAGAGGATACCATGTTTGTGGAGGAATGCTCATCCGGGAGGACTTTGTCCTGACTTCAGCACACTGCTTGAAAGATGCTTATCCTTTAACGGTGGTTCTTGGAGCTCACAACCTAAccaaagaagagaagaagagtcGGCAAGAGAGGAAAGTGTCACATTACCATCGACATCCCTTACATGAGAATATAACGCAGTTAAGTTACGACATCATGCTACTGAAGTTACATGCCAACGCCGTTCTGAACGAGTATGTGAAGGTCATTGGACTACCCAATAAAGATAAACGTATCCCAGCCAGAACCAAGTGCTCTGTCGCTGGCTGGGGCAAGACTTCACCAGATAAAACATCTGGTGCTGCAGATGTATTGATGGAAGTTGAAGTCACAATGCAGTTCAACTTTGAATGCGTAAAAAAGTGGAAAGATTACTTTATAAGTAGCCAAATGATATGCACTGATGATGGACAGAAAGGCTTTTGTCAGGGAGATTCAGGTGGACCTGTTATTTGCAAGAACAAGAACGTGGCACAGGGTATTGTTACTTCTTTTCGTAATCCACTGAAATGTGATGATGGTAAATTCCCCCGTGTGTACATAAATATTTCCTTCTTTAAGTCCTGGATTGAAGAGGTGATTAATGGAtagctttaaaaaatatatatatatacatataaaaatAATGCATGCATAAACAGATATATCATAAATGCATAACTTGTTGTGTAcgaatatacaggtaactgccaaaatagtGGAAACTCTTGAGTAATTGAGGGATACAAATGATTTTGAAACATACACTTCCACaaaggtgtggttcctgagttgattaagcaattaacatcgtGATTATGGTCACATGTAGAAAAATGCTGGGCagaccattattttggctaccatggcaatGAATACAAAGAATGACAATGCcgccatccacagggcacgagtggtcactgaataaatttgatgagcatgaaaaaaaacaatgtaaaccatatgTCATAGCCGTccctgtcaccagatctcaacccaattgaacactttaCGGGAGATAGTGGAGCGACTCCTGAGaccagcgttttccaccaccgtcaacaaaacaccaaatgatggcaTTTCTCGTGGGAAGAatgatgtcacatccctccaatagagttccagacagttgtagaatctatgccaaggtggaTTGAAGTTGTTCTGGTGGCCCAAcgaccctattaagacactttgtgttggtgtttcctttactttggcagttacctgtacaggTCTGCTTAACAAGGCACATTGCATATTGTATGTCTTTTTTTCTTTCCGTTTTGATTGGTGTAGCTGTACAGTAATGACATGTCCCACattctctgtttttttttatttttatcaattACTACTTTTACTACAATGAAATGTAATGTTTTCTAAAGCCAAATCTTTGTGACACAGTGGTTACTATGTTGCATGTTGAACCCAtgtaacatttgtaaaaatacatttttgtactttaggataatataatttttttatatttgtatttgttaatTGACTAGTGATTTTAAAATATTGTCAATGCTTAGTCATTGTGTGCATCAATCCTTTAATTTACCCCTAATACAATGATGAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343010 lncRNA downstream 1266 80426662 ~ 80427525 (-) True G302358
TU343008 lncRNA downstream 3725 80424709 ~ 80425066 (-) True G302356
TU343002 lncRNA downstream 8783 80402867 ~ 80420008 (-) False LOC110520645
TU343004 lncRNA downstream 15818 80409502 ~ 80412973 (-) True G302352
TU342957 lncRNA downstream 29324 80399193 ~ 80399467 (-) True G302325
TU343019 lncRNA upstream 3938 80436920 ~ 80443150 (-) True G302366
TU343030 lncRNA upstream 18920 80451902 ~ 80452220 (-) True G302377
TU343040 lncRNA upstream 36201 80469183 ~ 80474455 (-) True G302386
TU343042 lncRNA upstream 36631 80469613 ~ 80474661 (-) True G302387
TU343043 lncRNA upstream 36980 80469962 ~ 80475070 (-) True G302388
XM_036975321.1 mRNA downstream 7570 80416949 ~ 80421221 (-) False LOC110520645
XM_021598066.2 mRNA downstream 7574 80416949 ~ 80421217 (-) False LOC110520645
XR_005051394.1 mRNA downstream 7574 80416949 ~ 80421217 (-) False LOC110520645
XM_036975322.1 mRNA downstream 7632 80416949 ~ 80421159 (-) False LOC110520645
XR_005051392.1 mRNA downstream 92922 80308419 ~ 80335869 (-) False LOC110520643
XM_021598069.2 mRNA upstream 91111 80524093 ~ 80525529 (-) False olig1
XM_021598070.2 mRNA upstream 118066 80551048 ~ 80553267 (-) True LOC110520649
XM_036975307.1 mRNA upstream 213015 80645997 ~ 80658655 (-) False hpxa
XM_036975308.1 mRNA upstream 213015 80645997 ~ 80658660 (-) True hpxa
XM_036975300.1 mRNA upstream 364013 80796995 ~ 80873810 (-) False LOC110518808
TU343001 other downstream 7646 80419350 ~ 80421145 (-) True LOC110520645
TU342692 other downstream 377506 80049621 ~ 80051285 (-) True G302117
TU342471 other downstream 484357 79944051 ~ 79944434 (-) True G301928
TU341971 other downstream 977821 79450708 ~ 79450970 (-) True G301453
TU341970 other downstream 978319 79450088 ~ 79450472 (-) True G301452
TU343054 other upstream 74953 80507935 ~ 80508297 (-) True G302399
TU343413 other upstream 248004 80680986 ~ 80683186 (-) True G302660
TU343484 other upstream 287735 80720717 ~ 80721681 (-) True G302724
TU343486 other upstream 288756 80721738 ~ 80722623 (-) True G302725
TU344665 other upstream 1588406 82021388 ~ 82022265 (-) True G303663

Expression Profile