RNA id: XM_036975301.1


Basic Information

Item Value
RNA id XM_036975301.1
length 4726
RNA type mRNA
GC content 0.60
exon number 13
gene id LOC110518808
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80796995 ~ 80874124 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGGTGGAAGAGGACACGGAGACGCGCTTTCTATCACACAACGTCATCGCGTCccttgcgtgtgtgtgcgtgtgagataGAGGAATTCGAGAAGgtggcgaagagagagagagagagagattgtgaaatCATGAAAACGGTTTGTTGTTGTCTGAAGGAATAACCTATgcgacaaaaaaaatgtatacaattcAACGGCGATCTTCTTTTGCGTCGTCTCGGGGTAGCAGTTGGGGCTAAGGAAGGCTAAGCTGATTGCTGCTGGCTGGTGACTTCCCTTAGAAGCTGGTGTTGGACTGGAGCAGCCAGCTATGGCCATGAGCCAGAAGTCCCTCTTCCTTCTGTGGACCAGAGCCAACATGGAGGTTTAGACCAGACAGACGCCGAGCAAGTGTTCAGTGCTGTGGGTCCTCTGCCTGGGAATGGAGTGGTGTCAGCTGCAGACTGGATGACAGGGTCTTCAGGGGTAGCCCACCGCTAATCCGTTGCGTTACGGTAACACTGACGGCGAGAGACATCTTCACCCCGGCGACCACAACAGAATCTACCTCTTTTTCCTCATCCGACTCTATCTGGACTCTCTCCTGGTCCCCTCTACTgccccctccttcccttccctctcctccttttcccctcaccttccctcctccctcccctcttcttccctacTGTCaatctcttccttctctcctacCTTGTTGTCCATGTGCCAGCACCTCTCTCCTGCTCCTGTCTGAACCCTGAACATTGACTTCTGACCCTTGATCCCTCTGGAGGTCAGGATGAGCTGGCTGAGCCGGCTGACCCCCCGGGGTCCGGGGGGCAGGTCCAGTAGGAACGTAGCCTCTTCCAGTCCCTGTACTGCTGACCCAGAGACCTGCCTCATGGTGTTCGAGAACCACTGGAGACAGTTGTCCTGGGTACTGGAGCAGCAGGAGCCGTCAGGATGCAGCGATGACCTCACCGCGGTGCGGAACCACACCGATCAGATGCTGTGCCTCCTGGCTGAAGAGCGTCCGGGGGAAGTGGGCGAGGGCCCCCCCGGGACGTTAACGTCCAGTACCGTCCCCCCGGTGGGACCCATCCTGGGTCTGGTGGTGACCGAGAACGTCCTGGAGCGAGTGGTGCAGTGGCACCTGCGTCGCGGCTTGGACCCCGACAGCCAGGGGGCGTTGCTCAAGCTGTTCGAGATGCTGATAGGCCAGTCTCAGCAGCCCTTGCTCCAACACAAGGCGGTGCTGCAACCTCTACTGGGTCTGCTGGGGGCCTGTGCTGAGCCCCAGCTGGGCTGCCCTCCCTCTCTGGAGAACAGTCTGGTACTGCTGCTCAACCAGATCTGTGTGTCGATGGCGCGTGCCCCTGCGGTGTTGGAGCTGTTGTTCAGGTCGGCCCCGGTCCAACACGGTCCTACCAACCTGCTCATCTTCTCCCTGCTGGTCCCCTTCATCCACCGTGACGGGGCCATCGGACAGCAGGCCCGAGACGCCCTGCTCCTCGTCATGGCAACCTCCGCCAGCAACCAGGGCGTGGCACGCTACATCGCAGAGAACTCCTACTTCTGCCCGGTGCTGGCCACGGGCCTCAGTGCTCTCTACTCCTCCCTGCCGAGGAAGATAGAGGTACGGGGGGATGACTGGCACGCTCTGCGCAGGGAGGACTGGATGGGCGTGTCCTCTCTGGTGCTCTTCATGAACTCTCTGGAGTTCTGTAACGCTGTCATCCAGGTGGCTCACCCCCTGGTCCGTAGCCAGCTGGTCGACTACGTTCACAACGGCTTCCTGGTCCCTGTCATGGGACCCGCCCTACAtaagtcatcTGTAGATGAGATGATAGCCAGTACAGCCTACCTGGATCTGTTCCTGCGCAGCGTGACGGAAACAGCTCTCCTCAAAACCTTCCTACGCTTCATCCTCATGCATCGCCATGACAACGACACCATCCTGGACACCTTGCTGACGCGCGTCAGCAGCAACTCCAGGCTGTGTATGGTGTCTTTGAGCCTGTTCAGgactctgctctctctcaactGTGAAGACCTCATGTTGCAGCTCGTTCTCAGGTATCTTCTACCCTGTACCCATGTGATGTTGAGTCAGAGGCGTGCCGTCAGGGACACCGATCTCTATGGTAAATCAGCTGACAAGTTCCTGTCCCTCATCCCAGAGTGCTGCCGCCTCAGCGTACTGCCCTCTGCTGAGCGGGAGGAAGAACCTGCCTTCTGGGGGAAAGtaCTGAACAGCCCCAGCTCAGAGTCTCCTGTGCACCCCAAACCGAGCACTCCGTCCCGCCTGGCCCTCTTCATGCGCCAGCAGAGCACCGCACTGCCCTTCACCCCCTCCCCCACTGAGACGGTCCCCTCGTCCCCCCGCGGGGGCCCTAGCACCCCCCTGTCCCCCGACAGCCCCATGCACCCCGTCCCAGAGGGGCTGGACTGGGAGTCGGGGTACCTGGAGTACCTCAGGGACGCCCGTAGGGGGGTAGAGCTGTGCTCCTGGGCCTGCCGGAACTGGTCAGCCCCCTACGACGGAGAGGACCCCTCACCCAACACGGCCCCTCTACTGCCCCCGCCCCCCACCTCCAACCCCTCCCTGGCCATGTTCCCAGAGCACTTCTCCTTccagcagggaggaggaggtggtagtaCCTCCCACGGCCAGCAGAGGGCAGCGGTGGTGGCAGCAGCGCGGTCAGAGTGGAGCAGTACAGAGAGGGACAGTGGAGAGTGGGACGTCACCATCGGTAAAAACAACTGTACCATCAGCCTCACGCCCCGCACCAAGAAACGCAGCCTGCAGAGAGAGGAGGTCCCCCTCCCCaaacctctccacctccctcctgaCTCTACCTCTGCCTCCGTCCCTGACCCCTCTGCtgccccccacctcccctccgGCCTCTCCATAGGCCCTCACCAGGCCATCTTCAATGGAACGTCGTCGGGGGGTCAGGAGGACGGGTGTCCAGACAgccaggatggagggatggaggttaaGAAGGTGAAGAGAGATTTGGACGAGCAGCAGCAGCACGGAGACTCTAGTCAGAACGTTGCAGTAGGTGCCAGCCCAACCCCGGTCCCTACCCCGGCCCAGTCCTGTGGGCCCCTACAGGGGTTGCACAGGGAAGGGAATGGAAGTGTGACTGGGGAACACTCCAGACGTCTAACATCACACGTACAGAGTCACACCCAGGATCAGCCGGCTCCGTGGACTCCAGGAGCCTGTGCCAACTCCTCCAACGTCAGCCTGACCCCTCAGGTCCCTGGATCGGGACCTCCAGAGGCAATGCTCTCTACCCAGTCAGAAGCAGTGGAGAGGCTGATCTCTGAGCTCCTGGATGGGGCTGGaccgggggagggggggcagcaggGGCCTGGGGAGGGGGGCCAGCAGGGGCCTGGAGACTCCAACGGCCAGGGCATCAGCATCGAGGCCTTCACCCAGGAACTCCGGGagttggaggagagggtgagggagaggagcaggggggtggGGCTTCTCAGACAGCTGGAGGAGACCACCAGAGACCCCGACTCAGAGGAACCACTGCCCCCCTCACCCCTGGACTCTGACCTGATTGGGAATGGGGCAGGGGCTGGAGTGGAGCCCAAGGTAGTGGGGTCAGCTGTGGGGCTGTGCAGCCCTGCCAGGCCTCTAGGACAGCCATCCGCTCAGCCCTACACAGGTCCGTTTATGGTGGTTCTGTTTGCCAAGCTGGAGAACATGCTCCAGAACTCTCTGTATGTGAACATCTTGCTGACAGGGATCCTGTGCCAGCTAGCCTGCTACCCTCAGCCCCTGCTCCGATCCTTCCTCCTCAACACCAACATGGTGTTCCAGCCCAGCGTCAAGTCTCTCATACAGGTTCTGGGCTCAGTAAAGAACCGCATTGAGGTGTTTGCAGCATCCCATGAGGACTTCCCTGCCATGCTGAGGAAAGCCCAGCGCTACCTGGTTGCCAGGGGCAAGGTGGACTGGGCTGACTCTTCCCCCATGGGGGTACCCACCCTGCGACGCTCTGATTCCCtggGGTTACTGGGTTGAATGGAATTGGATAGGCAGCAGCAGGGAGGGTGTCTGGATGGTTCTGGTTCGGCTGCTACTGTCTGGATGGTTCTGGTTCGGCTGCTACTGTCTGGATGGTTCTGGTGtggctgctactgtctggatggttctggtttggctgctactgtctggatggttctggtttggctgctactgtctggatggttctggtgtggctgctactgtctggatggttctggtgtggctgctactgtctggatggttctggtgtggctgctactgtctggatGGTTCTGGTTCGGCTGCTACTGTCTGGATGGTTCTGGTTCGGCTGCTACTGTCTGGATGGTTCTGGTTCGGCTGCTACTGTCTGGATGGTTCTGGTTCGGCTGCTACTGTCTGGATAGTTCTGGTTCGGCTGCTACTGTCTGGATAGTTCTGGTCTGGATGGTTCTGGTTTGGCTGCTACTGTCTGAATAGTTCTGGTTtggctgctactgtctggatggttctggtgtggctgctactgtctggatGGTTCTGGTTCGGCTGCTACTGTCTGAATAGTTCTGGTTtggctgctactgtctggatggttctggtgtggctgctactgtctggatGGTTCTGGTTCGGCTGCTACTGTCTGAATAGTTCTGGTTtggctgctactgtctggatggttctggtgtggctgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343428 lncRNA downstream 8532 80792257 ~ 80794498 (-) False G302673
TU343427 lncRNA downstream 8768 80792257 ~ 80794262 (-) False G302673
TU343429 lncRNA downstream 8768 80792257 ~ 80794262 (-) True G302673
TU343465 lncRNA downstream 113692 80689126 ~ 80689338 (-) True G302706
TU343412 lncRNA downstream 114534 80684729 ~ 80688496 (-) True G302659
TU343598 lncRNA upstream 66338 80940462 ~ 81037215 (-) True G302811
TU343614 lncRNA upstream 90231 80964355 ~ 80965230 (-) True G302826
TU343643 lncRNA upstream 128827 81002951 ~ 81003318 (-) True G302848
TU343652 lncRNA upstream 155117 81029241 ~ 81029724 (-) True G302857
TU343659 lncRNA upstream 166281 81040405 ~ 81040901 (-) False G302862
XM_036975308.1 mRNA downstream 144370 80645997 ~ 80658660 (-) True hpxa
XM_036975307.1 mRNA downstream 144375 80645997 ~ 80658655 (-) False hpxa
XM_021598070.2 mRNA downstream 249763 80551048 ~ 80553267 (-) True LOC110520649
XM_021598069.2 mRNA downstream 277501 80524093 ~ 80525529 (-) False olig1
XM_021598068.2 mRNA downstream 370048 80428791 ~ 80432982 (-) True LOC110520647
XM_036975310.1 mRNA upstream 30916 80905040 ~ 80908349 (-) True LOC110520653
XM_036975309.1 mRNA upstream 105014 80979138 ~ 80984383 (-) True LOC110520654
XM_036975305.1 mRNA upstream 137974 81012098 ~ 81038367 (-) False LOC110520656
XM_036975306.1 mRNA upstream 137974 81012098 ~ 81038367 (-) True LOC110520656
XM_021598650.2 mRNA upstream 1002497 81876621 ~ 81887719 (-) True si:dkey-69o16.5
TU343486 other downstream 80407 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 81349 80720717 ~ 80721681 (-) True G302724
TU343413 other downstream 119844 80680986 ~ 80683186 (-) True G302660
TU343054 other downstream 294733 80507935 ~ 80508297 (-) True G302399
TU343001 other downstream 381885 80419350 ~ 80421145 (-) True LOC110520645
TU344665 other upstream 1147264 82021388 ~ 82022265 (-) True G303663
TU344667 other upstream 1148705 82022829 ~ 82023451 (-) True G303665
TU344968 other upstream 1423632 82297756 ~ 82314081 (-) True pard3bb
TU345254 other upstream 1871120 82745244 ~ 82747738 (-) True LOC110505453
TU345368 other upstream 1957246 82831370 ~ 82851751 (-) False G304204

Expression Profile