RNA id: XM_036975309.1


Basic Information

Item Value
RNA id XM_036975309.1
length 3163
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110520654
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80979138 ~ 80984383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTACTGAATATTTCCCCTTTCAGTCTCTGTGGGGAGCAGGCTTGGCTACTAACTCTGTACTAGACAATTAAATTATGTATAAAAGTTTCAGAAACAATGCAAAATTGGACTGCAGAAACATTAAACGACAGCCAGAGCTTTGGAAGTTTTGGCAAATCTTGGGAAAAAGTAACACATCCTTATGATTGTTGTTCACAACCATTTGGGAAGCCTAATCTCAGCTTTTATCAGACAATCAGAAGACCGCTGAAGAAATGTCATATTTTATTTAAGAATTTTCTGAAGGGACCCTCTCGGATTTCCACCGTAGAAACAAGCTCATCTCTGGATGAGTGTAAAGCCATAATCAGAGAACTGGCCACCGAGCTACATCGGATATCAAAGTATCAAGATAATTTCAACACCAGCCACGAGGATGGCTACAGCCTGGCAGAGTGTCAACAGTTCATCCTACAATGGGCGGAGGAGTTGAGCATCTTACCAAAGATATCCGTGGGGCAAAGCAGGAGCTCACCAAAGCCCCTGCGTACCTGCTGGGAGGActatgaggtagaggagagaacaTCTCCAAAAGAGGCTGAGAGAAGACTGGCAGAAGCTCAGCGCATCATCTCAGGATGGGCTGCAGGACTACAAACACGAAAACAGGACTCAGTGTGTCCAGGAGAGGATGTCTGTTCAGTCCTGCAGGATCTGGAGGGACAGTGGAAGAGTGGGAAACTACCCAACATGCTCCCTGTCATGGACTTCATAATCTGGACTGTGTTACAGGAACAACCTAAAGAGGGCTCCATCCCAGAGCTGTGGCTCAAATCCAAGCAGAGGTTCAAACACTCAGGCTTCACCACAGTGATTCCTGAATCAGTATGGGACTGGATAAGCAAAGCATCAGTTGACATCCTCTTGGACCCTGAATCAGCCAATCCAGATTTCATAGTGTCCAACAATCAGAAACGTGTGAGAGTGGGCAAAATAATAGAGAGTAAACATGATCCTAGAGACGGATACCGTCACTGCCGCGCATCTCACAAGTATGACGGGTGGTGGTGTGCACTGGGAACACAGGGCTTTACCAAGGGTAGGCATTACTGGGAGGTGGGGGTGGACGGGAAGACAGACTGGAGGATAGGGATAGCTAAGGAGTCTGCACCAAGAAGAGGCTTCAGTCAACTGAACACATCAACAGGTTACTGGACACTACGGATGCAGATCAGTGGGCTGAAGGCTCTAACTGTTCCGGCTGTTGATATCAAGATTCCAGAAAATCTCAAGAAGATTGGGGTCTACCTTGACATGGAGGAGGGGCAGCTCTCCTTTTATGACGTTGTAAGACGCAGCCATATCTACACCTTCAATAACACGTTTTCTGAACAGGTTTATCCAGTCTTTGgcacagtagagacagacagagaccttaTCATACTGTAGTACACAgctaaatagaaaataaaagtcaCAGAAGTTATTGAGGATGTCTCATGACTAAGAACCACCCTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACAGTAGACCACCCTAGACCAGTCTAGACAACCGTAGACCACCCTAGACAACCGTAGACCACCCTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACAGTAGACCACCCTAGACAACAGTAGACCACCCTAGACAACAGTAGACCACCCTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACCGTAGACCACCCTAGACCACCCTAGACAACTGTAGACCACCCTAGACAACAGTAGTCCACCCTAGACCACCCTAGACAACCATAGACCACCCTAGACAACAGTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACCGTAGACAACCGTAGACCACCCTAGACAACAGTAGACCACCCTAGACAACCGTAGACCTCCCTAGACAACAGTAGACCCCCCTAGACAACCGTAGACCACCCTAGACAACAGTAGACAACCGTAGACCACCCTAGACCACCCTAGACCACTCTAGACAACCGTAGAGCACCCTAGACCACTCTAGACAACCGTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACAGTAGACCACCCTAGACCAGTCTAGACAACCATAGACCACCTTAGACAGCAGTAGATCACCCTAGACCACCCTAGACAACCATAGACCACCCTAGACAACCGTAGACAACCGTAGACCACCCTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACAGTAGACCACCCTAGACCACCCTAGACCACTCTAGACAACTGTAGAGCACCCTAGACAACCGTAGACAACCGTAGACCACCCTAGACCACCCTAGACCACCGTAGACCACCCTAGACCACCCTAGACAACCGTAGACAACCCTAGACCACCCTAGACAACCATAGACAACCGTAGACCACCCTAGACCACCCTAGACAAGCGTAGACCACCCTATACCACCCTAGACAACCGTAGACCACCCTAGACCACCCTAGACAACCGTAGACCACCCTAGACAACAGGCCATCATGTGATGACATCCCCATATTTTTAACATTGACATTTTGGCGAAATTACTCTGCCCATGATAGCACCAATTATgccacaaaaaaaacacagctaATTCCATACATGACATGGTGTATATAATATTTACTAACTTTGTTCTGTTCTCTTCCATCGCCAAAGCACAGCTAATTCCATACACAACATTGATCTTTGATCTGTTCTCTTCCATCGCCAAGCACAGCAGGTCGATGGTAATCCATAATGGTGACCATCTATTATCCTTAATCCAGTTAGAAATCAGCTGTTTGCTAGAGTCTATCTTCCTAAAGAGTGTCTGCATTATGATTAATGAAGCCAGATGTATCTTTCTTTATGACTTGGGAAGCTTTACTTTCTGAATTTGAATGATAATATGACATTAGATGTTTACTATAATTTCATAATTTGAGGTTAGCTACAGTAATAATTTTTAAATTTTTTCATACTTCCTCAATGAGTTTGTAAAGCACTGACGAAGCTACAGAAGATAAAAATGTTTGTTTATTCTTTGTTTATGCACTTTGCACTTTGCACTTTCTGTTATTCTTTCAAGTATGGATTAAACAGAGCATATTTTAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343614 lncRNA downstream 13908 80964355 ~ 80965230 (-) True G302826
TU343557 lncRNA downstream 128386 80850156 ~ 80850752 (-) False G302777
TU343555 lncRNA downstream 128386 80850281 ~ 80850752 (-) True G302777
TU343547 lncRNA downstream 143232 80834394 ~ 80835906 (-) True G302771
TU343538 lncRNA downstream 160435 80817772 ~ 80818703 (-) True G302765
TU343643 lncRNA upstream 18568 81002951 ~ 81003318 (-) True G302848
TU343652 lncRNA upstream 44858 81029241 ~ 81029724 (-) True G302857
TU343659 lncRNA upstream 56022 81040405 ~ 81040901 (-) False G302862
TU343657 lncRNA upstream 56298 81040681 ~ 81040901 (-) True G302862
TU343660 lncRNA upstream 56976 81041359 ~ 81041942 (-) True G302863
XM_036975310.1 mRNA downstream 70789 80905040 ~ 80908349 (-) True LOC110520653
XM_036975299.1 mRNA downstream 105014 80796995 ~ 80874124 (-) False LOC110518808
XR_005051391.1 mRNA downstream 105014 80796995 ~ 80874124 (-) False LOC110518808
XM_036975301.1 mRNA downstream 105014 80803030 ~ 80874124 (-) True LOC110518808
XM_036975300.1 mRNA downstream 105328 80796995 ~ 80873810 (-) False LOC110518808
XM_036975305.1 mRNA upstream 27715 81012098 ~ 81038367 (-) False LOC110520656
XM_036975306.1 mRNA upstream 27715 81012098 ~ 81038367 (-) True LOC110520656
XM_021598650.2 mRNA upstream 892238 81876621 ~ 81887719 (-) True si:dkey-69o16.5
XM_036975328.1 mRNA upstream 982747 81967130 ~ 81979522 (-) False slc23a3
XM_036975329.1 mRNA upstream 983612 81967995 ~ 81979522 (-) True slc23a3
TU343486 other downstream 256515 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 257457 80720717 ~ 80721681 (-) True G302724
TU343413 other downstream 295952 80680986 ~ 80683186 (-) True G302660
TU343054 other downstream 470841 80507935 ~ 80508297 (-) True G302399
TU343001 other downstream 557993 80419350 ~ 80421145 (-) True LOC110520645
TU344665 other upstream 1037005 82021388 ~ 82022265 (-) True G303663
TU344667 other upstream 1038446 82022829 ~ 82023451 (-) True G303665
TU344968 other upstream 1313373 82297756 ~ 82314081 (-) True pard3bb
TU345254 other upstream 1760861 82745244 ~ 82747738 (-) True LOC110505453
TU345368 other upstream 1846987 82831370 ~ 82851751 (-) False G304204

Expression Profile