RNA id: XM_036975305.1


Basic Information

Item Value
RNA id XM_036975305.1
length 3467
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC110520656
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 81012098 ~ 81038367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAACATAAATTAGCCACAACCGATAGGATTTTGTCAACGTGACTGGAACGATTCTCGCATGGTCTCAACAGGACTGCCTGTAGTGGGTAATATAAAGCCGACCACGGGTTCACCGGCGTTTGTAGAACTTGATCACCGCGGATACGAACAGAAGGATGTCCACAGCGTCTTACTCGGAGAGGGTCACAATGGGGCCCCTGGTCGCAGCTATCGATCAAGGCACAAGCTCGACGAGGTTTCTGGTGTTCGATTCTAAAACGGCAGAGCTGCTTAGTCACCACCAGGTTGGGATAAAGCAGAGTTTCCCTAAAGAGGGctgggTAGAAGAGGACCCTAAGGAGATTCTTCAGTCAGTTTATGAGTGTATGGAGAGGACCTGTGAGAAGCTCGGCCAGCTCAACATAGACATCTCCAACATTAAAGCTGTCGGCGTGACCAATCAGAGAGAGACTACGCTGGTTTGGGACAAAGAGACGGGGGAACCGCTCTACAATGCCATTGTTTGGCTGGACCTTCGTACACAGTCCACAGTGGAGAGGCTGATCAACAGCACCCCGGGAAAGAACAAGAACCAGCTGAAGcacaAGACCGGTCTGCCCATCAGTACATACTTCAGTGCTGTGAAGCTGCGTTGGCTCATGGACAACGTGGAGGAGGTCGCTGAGGCTGTCCTGACACACAGAGCCATGTTCGGCACCGTGGACTCCTGGCTTATCTGGTGTCTGACAGGGGGGAAGAGTGGAGGGGTGCATGTCACAGATGTGACCAATGCAAGTCGCACCATGCTCTTCAATATACACACCCTGGACTGGGACCCCGAGCTCTGCaaATATTTTGATGTCCCAATGGAAATTCTACCCCAAGTGAAGAGCTCCTCAGAAATATACGGTTCAATGAACTCTGGTTCTCTGGCAGGAGTTCCCATCTCCGGGTGTCTCGGGGACCAGTCCGCCGCTCTGGTTGGTCAGATGTGCTTCCAGGATGGACAGGCTAAAAACACGTACGGAACAGGCTGCTTCCTGCTGAGAAACACAGGGATCAAGCCAGTGATGTCAGATCACGGCCTCCTGACCACACTGGCCTACAAACTGGGGAAGGACTCACCAGCCCACTACGCTCTCGAGGGGTCGGTGGCCATAGCTGGCGCGGTGGTACGCTGGCTGAAAGATAACCTGGGAATCATCCAATCCTCCGCAGAGATCGAGAAGCTGGCAGGTGATGTGGGCTCGTCCTATGGATGTTACTTTGTTCCTGCCTTCTCCGGGCTGTACGCCCCCTACTGGGAGCCCAGTGCACGAGGTATCATCTGTGGCCTGACTCAGTTCACTAACAGATCTCACCTGGCCTTCGCTGCGCTGGAGGCTGTCTGTTTTCAGACTAGAGAGATCCTGGAGGCTATGAATCAGGATTATGGGGTTCCTTTGACCCAGCTCCAGGTGGACGGAGGCATGACCTCCAACAGACTACTGATGCAGCTTCAAGCTGATGTACTCTGCATCCCCGTGGTGAAGCCGTCCATGTCGGAGACCACGGCGCTGGGCGCCGCCatggcagcaggagcagcagaggGGGTGGGTGTCTGGAGTCTGACCCCTGGTAACCTCACAACCATCCCCACCGACAAATACCAACCCCTGATCAACCCTGAGGAGAGTGAGTTCCGGTACGCACGATGGAAGAAGGCCGTCCAGAAGGCCATGAATTGGGAGACCACGGAGCCCATCATCAGCAATGGGAACGGCCCGGTCAGCAATGGGAACGGCCCGGTCAGCAATGGGAACGGCCCGGTCAGCAATGGGAACGGCCCGGTCAGCAATGGGAACGGCCCGGTCAGCAATGGGAACGGCCCGGTCAGCAATGGGAACGgacaccactaGTAGGATCTGAGCCAACACTAGGAACCGTTGAGGATACATATGGAGTTGAGGAGAGGGGGAACATACAGAATGTCACACCCGTCCCTCCATAGGTCCACATGGCACCTACATCTGATGGCTGTTTGGGCATGCTGTGGACTCCCTTTCCATCTGAGAGCATTCCTGGTCCACATCCTGTTGCCTCCTGTACATGTACTCAGCCCCGTTCTCTTAGTCCCATGGACAAGGGCCCTGTGAACCTGTGAACCTTTTATCTTGGAAGAAAGGCCCAAAGATGGAATCAATTGATGGAACTCGACTGTGTGTCTGAACTGTGATGGAAGAGACTGATTCTCCTGTGGAAGGAAAAAAAAACATCCAATCGTGTCTTGTTTTCTATGAATTTATTAAGCAGATATTTTTAATGTTTTTATCTTTTTTGTTTGTGTCAGATGTTGTGacactgtacatttttttttaatttttttttaaattacagatTAATTACACTGGTTAGTAATAGCGCCACCTTGTAACCAGTGTTGTGAGAATGTtgtaggctacatatctataatgtGGAATGGAAGGCCCGCTGGGAGATGGTTTGCTACTCTGATGATCGTAGATGTACCTAGTTATATGTGGGTCCACTTGAAGGAACCTCTGTATGAAAAGCATTTGCAGGGTCCTTACAGCACTTTACAATGATTGATTTACGTGTGGAGTGCATGATATGAGTACGACGCTCTGGATTTTTAAAGGGACATTttgtgtatttaaaaaataataattaaataccGATTTTAAGGGATCATCAGTGGATAATGAAAGGTCTGTGAAACACATTTACTACTTAAGTTGCAAGTGGAAGTTTTAACTACAAAATGCTTCATAAGACCTGTGTTTTTCAGTCGTTCAAGAAAAGTATATTACTTCCTAATTACATTTTTTGGTCATGAATTGTCTTGTCCTTACAGCACTTTATAATGATTGATTTGCATGTGGACTTCATGGTATGGGTACAATGCGCTAATGtaaatgataaaaaaaataagtCAATTAACAGTAATGCTTTTTGTCAAGAGATGTATTATCAATTGATAATGAATTGTGGGGATCAATGTGAAGGCCAGAAATAACAAAGTGACAGAGAAATCTAAAATGTTAACTGTACAAGATGATCTGTTTTGGTTATTAATTTACTGAGGAATGTCAACCTGGTAAAATTGTTGTAAAGAGGAAATGAATCCAATGTGCTTCATATCCCAAATGGCTGCTTTTCAGACATGGATACAGAGAAGCATGGTCTGGACCTTGTTATGTATAAAGATCTTATACGTTTTCAGTAACGTCTGTAAAATCTAATATGAAAATCTAAAGCCCTCGTTCTGTGTATGGAAAGAAAAGGACACTAATCTTAaagttgttttaaaaaaatgttttaaactaCACATTTCATTTAAATTGTTTTTGTTGTAATTATTTAATGTTTTATTAGATTTGTCCTTGTTTGTCTTTTCCTGAAAAATGGGTTTGGGTGCCTCCTATTCTGTTGTGCAAAGAAGAATGTGACAATGCACATTGCAATAAAATGTTACTTTTTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU343643 lncRNA downstream 8780 81002951 ~ 81003318 (-) True G302848
TU343614 lncRNA downstream 46868 80964355 ~ 80965230 (-) True G302826
TU343557 lncRNA downstream 161346 80850156 ~ 80850752 (-) False G302777
TU343555 lncRNA downstream 161346 80850281 ~ 80850752 (-) True G302777
TU343547 lncRNA downstream 176192 80834394 ~ 80835906 (-) True G302771
TU343659 lncRNA upstream 2038 81040405 ~ 81040901 (-) False G302862
TU343657 lncRNA upstream 2314 81040681 ~ 81040901 (-) True G302862
TU343660 lncRNA upstream 2992 81041359 ~ 81041942 (-) True G302863
TU343663 lncRNA upstream 7772 81046139 ~ 81046594 (-) True G302866
TU343676 lncRNA upstream 19171 81057538 ~ 81058150 (-) True G302873
XM_036975309.1 mRNA downstream 27715 80979138 ~ 80984383 (-) True LOC110520654
XM_036975310.1 mRNA downstream 103749 80905040 ~ 80908349 (-) True LOC110520653
XM_036975299.1 mRNA downstream 137974 80796995 ~ 80874124 (-) False LOC110518808
XR_005051391.1 mRNA downstream 137974 80796995 ~ 80874124 (-) False LOC110518808
XM_036975301.1 mRNA downstream 137974 80803030 ~ 80874124 (-) True LOC110518808
XM_021598650.2 mRNA upstream 838254 81876621 ~ 81887719 (-) True si:dkey-69o16.5
XM_036975328.1 mRNA upstream 928763 81967130 ~ 81979522 (-) False slc23a3
XM_036975329.1 mRNA upstream 929628 81967995 ~ 81979522 (-) True slc23a3
XM_036975332.1 mRNA upstream 955684 81994051 ~ 82038179 (-) False LOC110510426
XM_036975330.1 mRNA upstream 955684 81994051 ~ 82040699 (-) False LOC110510426
TU343486 other downstream 289475 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 290417 80720717 ~ 80721681 (-) True G302724
TU343413 other downstream 328912 80680986 ~ 80683186 (-) True G302660
TU343054 other downstream 503801 80507935 ~ 80508297 (-) True G302399
TU343001 other downstream 590953 80419350 ~ 80421145 (-) True LOC110520645
TU344665 other upstream 983021 82021388 ~ 82022265 (-) True G303663
TU344667 other upstream 984462 82022829 ~ 82023451 (-) True G303665
TU344968 other upstream 1259389 82297756 ~ 82314081 (-) True pard3bb
TU345254 other upstream 1706877 82745244 ~ 82747738 (-) True LOC110505453
TU345368 other upstream 1793003 82831370 ~ 82851751 (-) False G304204

Expression Profile