RNA id: XM_036975331.1


Basic Information

Item Value
RNA id XM_036975331.1
length 2605
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110510426
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 81994051 ~ 82040699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGATACAATGGTTATTATCATCCACCGACTGACGAAACGGAAGGCTACACTAACGGAAGCTGGAGACCCGTCGCTTGGTCTATTCGGTACCCACAGACACCCGTTACGAAACGTTGTGACGGTGCTTCAGCCTAGAATAACGAGCGGTGACTATTTGTTTTTGTCGACGTTGATGTCTCTTCTTCTTTATCCGTAGGAGTTGTTAATTTTTTATTACATTGAATCGAGAGCTTATCGGGAAGACAAAATGGCTGAGATGGGTATGGGGAAGGGGGTTACTGCGGGGAAACTCGCTAGTAACGTGCAGAAGAAATTAACACGGGCCCAAGAGAAGGTTATGCAGAAACTGGGGAAAGCGGATGAGACCAGAGATGTTGCATTTGAGGAGGGAGTTATCAACTTCAACAAACAATATACAGAGGGCTCCAAACTGCAGAAAGACCTGAGGGTCTACCTGGCGGCAGTACAAACGATGCACGAATCCTCCAAGAACCTTAAGGAGTGTCTGTCTGACATGTACGAGCCGGAGTGGTACGGCAAAGAGGATGTGGACTCCATCGTCGAGGACACTGACGTTCTGTGGACAGACTTCCATCAGAAGCTTGTGGATAATGCTTTGATATCCATGGACACATACCTGGGGCAGTTCCCTGATATTAAGtctCGTATTGCAAAGCGTGACAGGAAGCTTGTGGACTACGACAGCGCCAGACACAACCACCTTTCGACCAATAAGGGGAAGAAAGGAAAGGAtgggagcatcaagatcaccaaGCCAGTGTCTCTGTTGGAGAGGGCCACTCCAGTTTGGGCTCAGGGCATCCTGTCAGCCCACAACATTGCTCAGAGTAACCTCTCTAGGAACCAGgcGGAGGATGAGTTGGAGAGAGCTCAGAAGGTGTTTGAGGAGATTAATGAAGATCTTCAGGAGGAACTGCCCTCACTATGGAACAGtCGTGTTGGCTTCTACGTTAGCACCTTCCAGAGTATGGCTGGCTTCGAGGAGAAGTTCCACAAGGAGATGGGGAAGCTGGACCAGAATCTGTACGATGTTCTTGTCAAACTGGAGAGGCAGGACATGTGTGGtGAGCTCCCCAGAGGAGCAAGTCCAGCCAATCACACTCTGAGTCCAGCCGTACCGCCTCCCATCCCTAAGTCCCCCTCCAAGCTGAGACCAGCGATGCCGCCGCGGCCTGAATCCAGCCCCTGTCGGGACATGAAACCAGAAAACATCATTAACCTGTTTGATGCTGCAGCTGCTCCTAACATCAGTGTTACATCCCCAACACAGGCGATATCGTGGGACACATGGGAGGCTGACACGCCCACAGCAGCTGCTACAGCACCTACTCCTACAGCCACAGCAGTAGAGGAGATTCCTGCTGTCGCAACAGTAGCAACCAATGGGGCTTCAGAGGCGGTAGAGATGCCGCCAGGATTCCTCTTTAAAGTGACCACCATGCATGACTATGCCGCTAATGACTCGGATGAGCTGGAGATGAAGGCTGGAGACATAGTGCTGGTTGTAGCCTTCGACAACCCAGAAGAACAGgatgAGGGCTGGCTGATAGGGATGAAGGAGGGAGACTGGACCCAGAATAAAGAGAGTGCCGTCAAAGGGGTGTTCCCTGAGAACTTTACCTCCAGGCTGTGAGAGAGGAGACACTTCCTCTCCTACTTTGACCACTCTCTCTTCCACAAGATACTctcttctctgacctctctcttcactctctctctctcttccctctttcttccctctctctattccctttctctctattccctctctctctccctctcttccctctcgcttccctctctcttccctctctcttccctctctctcccttccctctctctcttccctctgtctctctgcccgtGCCATCCTCCCTCCTAATTTTCTAACCTCTGGGATTGTAAAGTGTGATACTGTGATACTGTAGTCATTGGCAAGAGAAACAGCACTGCATAATCAACTGTCTGTTCTGTAACCATTTCTAGCATGGATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGAGTACATCACATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTCCATCATATCACACTGTAGGGTCAGAGTACATCATATCACACTGTAGGGTCAGATTACATCATATCACACTGTAGGGTCAGATTACATCACATCACACTGTAGGGTCAGATTACATCACATCAAACTGTAGGGTCAGA

Function

GO: NA

KEGG:

id description
K12562 AMPH; amphiphysin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344646 lncRNA downstream 1052 81987438 ~ 81992999 (-) False G303662
TU344658 lncRNA downstream 2452 81987106 ~ 81991599 (-) False G303662
TU344641 lncRNA downstream 2452 81987438 ~ 81991599 (-) False G303662
TU344654 lncRNA downstream 2452 81987438 ~ 81991599 (-) False G303662
TU344656 lncRNA downstream 2452 81987438 ~ 81991599 (-) False G303662
TU344711 lncRNA upstream 54026 82094725 ~ 82095096 (-) True G303708
TU344712 lncRNA upstream 55455 82096154 ~ 82096594 (-) True G303709
TU344713 lncRNA upstream 55984 82096683 ~ 82097649 (-) True G303710
TU344717 lncRNA upstream 58176 82098875 ~ 82101486 (-) False G303712
TU344720 lncRNA upstream 59258 82099957 ~ 82101486 (-) True G303712
XM_036975328.1 mRNA downstream 14529 81967130 ~ 81979522 (-) False slc23a3
XM_036975329.1 mRNA downstream 14529 81967995 ~ 81979522 (-) True slc23a3
XM_021598650.2 mRNA downstream 106332 81876621 ~ 81887719 (-) True si:dkey-69o16.5
XM_036975305.1 mRNA downstream 955684 81012098 ~ 81038367 (-) False LOC110520656
XM_036975334.1 mRNA upstream 65199 82105898 ~ 82143077 (-) False LOC110520662
XM_036975333.1 mRNA upstream 65199 82105898 ~ 82143081 (-) True LOC110520662
XM_036975339.1 mRNA upstream 257033 82297732 ~ 82497625 (-) False pard3bb
XM_036975335.1 mRNA upstream 257033 82297732 ~ 82586082 (-) False pard3bb
XM_036975336.1 mRNA upstream 257033 82297732 ~ 82586082 (-) False pard3bb
TU343486 other downstream 1271428 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 1272370 80720717 ~ 80721681 (-) True G302724
TU343413 other downstream 1310865 80680986 ~ 80683186 (-) True G302660
TU343054 other downstream 1485754 80507935 ~ 80508297 (-) True G302399
TU343001 other downstream 1572906 80419350 ~ 80421145 (-) True LOC110520645
TU344968 other upstream 257057 82297756 ~ 82314081 (-) True pard3bb
TU345254 other upstream 704545 82745244 ~ 82747738 (-) True LOC110505453
TU345368 other upstream 790671 82831370 ~ 82851751 (-) False G304204
TU345446 other upstream 909370 82950069 ~ 82951356 (-) True G304264
TU346425 other upstream 1915045 83955744 ~ 83986517 (-) True abi2a

Expression Profile