RNA id: XM_036975333.1


Basic Information

Item Value
RNA id XM_036975333.1
length 2966
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110520662
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 82105898 ~ 82143081 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACAAATAGCAGATCTCCTGTCCAACAGCCCCTCATTCAGTTAACAACCTTCAACAGCAGCCCAGTTCCTCCAGCCAGACCCTCGGACAACGTCCACCATGAGCAAGTCCTTCTCCTCCCAGTCCGCCCAGTCAGCCTCTTCCTACCGCCGGACCTTTGGTTCTGGTATTGGATCCACCCCAGGCATGTCCTCCATGTTCTCCCACAGTGGACGCGGCTCCTCCGGCTCCTCCGGCTCGGCCCACATGTCCTCTAGAGTCTACGAGATGACCAAAAGCTCCGCCCGCCCCAGCTACTCCTCCGGTAGCATTCGTTCCTCTTCCGGCGGTGCGATGCGCTCGTACGCCGGGATGGGCGAGAAGCTGGACTTCAGCTTGGCCGACGCCACGAACCGCGACTTCCTGGACACCAGGACCAATGAGAAGGCAGAGCTGCAGCACCTGAACGACCGGTTCGCCAGCTACATCGAGAAGGTCCGTTTCCTGGAGCAGCAGAACGCTACTCTGGTGGTGGAGATCGAGAGGCTGAGGGGTCACGAGCCGACCCGCGTGGCCGAGATGTacgaggaggagatgagagagctgAGGCGTCAGGTGGACGGCATGTCCAATGACAGAGCCCgcatggaggtggagagagacaacCTGGCAGACGACCTGCAGAAACTCAAACTCAGactgCAGGAGGAGATCCACCAGAGGGAAGAGGCAGAGAACAACCTGTCTGCCTTCAGAGCTGACGTGGACTCTGCCACTCTGGCCAGGCTGGACCTGGAGAGACGCATTGAGAGTCTACAGGAGGAGATTGCCTTCCTCAAGAAGATCCACGAGGAGGAGATCCATGAGATGACGAGCCAGATCCAGGAGACCTCGGTGCAGGTCCAGATGGACATGTCCAAACCAGACCTGACCGCTGCCCTCAGGGACATCCGTATGCAGTACGAGGGCATCGCAGCCAAGAACATCTCAGAGGCAGAGGACTGGTACAAGTCAAAGgTGTCAGACCTGAACCAGGCTGTGAACAAGAACAACGATGCTCTGAGACAGTCCAAACAGGAGAGCATGGAGTTCAGGCATCAGATCCAGTCCTACACCTGTGAGATCGACTCTCTCAAGGGAACCaACGAATCTCTGCTGAGGCagatgagggagatggaggatcGTCTGGGAAACGAGGCTGGAGGTTACCAGGACTCCATCACCCGTCTGGAGGCTGAGATCGCTAAGATGAAGGATGAGATGGCTCGTCACCTCagagagtaccaggacctcctcaATGTCAAGATGGCCCTGGATATAGAGATCGCTACCTACAGGAAGCtactggaaggagaggagagccgcaTCACTGTATCTGGCTCCCACTCCGCCTCTCACTCTGCTGCTCACTCTGCTGCTCACTCTGCTGCCTCATCATATTCCACTATTGGATTCAGAGAGACCAGCCCAGACGTAGGGCGTTCATCAGAGGTCCACTCAAAGAAGACTGTTCTGATCAAGACCATCGAAACCCGCGATGGAGAGGAAAGTCCCTTTGAGACCATGTCTCTTTTGGAAGAGAGCCCtgtctcacaaaaaaaaaaaaagagcagcAGAAAAAACAAGGTGGTCAGTGAATCTACACAGCACCAGCAGGACAtcatgtaaacaacaacaaacaaacaaacgaaGCAACAAcaagttaaaacattttttttttacataccaaGATACATGGGCTGCTCTAGGTAGCTTTTCTAGGGAAAGCCTCTTTTGAAAGGTTTCTTTTTGAGAGGGAGTGAGTTATTAACACCTTATGAAGAGTTATAACCACATTTACACAGGGTTATACCTGCCTTAGGTATGTTCATAACTCACTAACTCCTAGTAATCAgattttatatgaccaatcaccaaaggagaagaagacagaagaAGACAATATTACCGTAATCAGAAGGCAATGTTACCATAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCGTAGTCAGAATACAATGTTACCGTAGTCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCGAAATCAGAAGGCAATGTTACCATCATCAGAAAGCAATGTTACCGTGATCAGAAGGAAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCATAGTCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGAAATCAGAAGGCAATGTTACCATAATCAGAAAGCAATGTTACCGTAATCAGAAGGAAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCATAGTCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAATACAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGGCAATGTTACCATAATCAGAAAGCAATGTTACCGTAATCAGAAGGACATGTTACCGTAATCAGAAGACAATGTTACCGTAATCAGAATACAATGTTACCGTAATCAGAAGACAATGTTACCGTAATCAGAAGGTGGGAACAAGGTGGAATGAAATTCAAGTCAGGCCCAGGCCAGAACAGAACACGCATGGCTAGAGGGGATCTCCAGAATGCCAAGAGATGTATCTCTGTAGTCCacgtttctttgtgtgtgtgtgtcagaaagaGTCTGCTTCACAATGTTTCACAGCCGATGATCTGAAATAAAATACAGTGTATGTTGA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344717 lncRNA downstream 4412 82098875 ~ 82101486 (-) False G303712
TU344720 lncRNA downstream 4412 82099957 ~ 82101486 (-) True G303712
TU344713 lncRNA downstream 8249 82096683 ~ 82097649 (-) True G303710
TU344712 lncRNA downstream 9304 82096154 ~ 82096594 (-) True G303709
TU344711 lncRNA downstream 10802 82094725 ~ 82095096 (-) True G303708
TU344758 lncRNA upstream 1902 82144983 ~ 82185878 (-) True G303727
TU344779 lncRNA upstream 34093 82177174 ~ 82179149 (-) True G303745
TU344794 lncRNA upstream 70203 82213284 ~ 82213516 (-) True G303758
TU344797 lncRNA upstream 107248 82250329 ~ 82250588 (-) True G303761
TU344798 lncRNA upstream 108290 82251371 ~ 82251586 (-) True G303762
XM_036975330.1 mRNA downstream 65199 81994051 ~ 82040699 (-) False LOC110510426
XM_036975331.1 mRNA downstream 65199 81994051 ~ 82040699 (-) True LOC110510426
XM_036975332.1 mRNA downstream 67719 81994051 ~ 82038179 (-) False LOC110510426
XR_005051398.1 mRNA downstream 82175 82023279 ~ 82023723 (-) True LOC118964333
XR_005051397.1 mRNA downstream 82718 82022835 ~ 82023180 (-) True LOC118964332
XM_036975339.1 mRNA upstream 154651 82297732 ~ 82497625 (-) False pard3bb
XM_036975335.1 mRNA upstream 154651 82297732 ~ 82586082 (-) False pard3bb
XM_036975336.1 mRNA upstream 154651 82297732 ~ 82586082 (-) False pard3bb
XM_036975337.1 mRNA upstream 154651 82297732 ~ 82586082 (-) False pard3bb
XM_036975338.1 mRNA upstream 154652 82297733 ~ 82586081 (-) False pard3bb
TU344667 other downstream 82447 82022829 ~ 82023451 (-) True G303665
TU344665 other downstream 83633 82021388 ~ 82022265 (-) True G303663
TU343486 other downstream 1383275 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 1384217 80720717 ~ 80721681 (-) True G302724
TU343413 other downstream 1422712 80680986 ~ 80683186 (-) True G302660
TU344968 other upstream 154675 82297756 ~ 82314081 (-) True pard3bb
TU345254 other upstream 602163 82745244 ~ 82747738 (-) True LOC110505453
TU345368 other upstream 688289 82831370 ~ 82851751 (-) False G304204
TU345446 other upstream 806988 82950069 ~ 82951356 (-) True G304264
TU346425 other upstream 1812663 83955744 ~ 83986517 (-) True abi2a

Expression Profile