RNA id: XM_036975337.1


Basic Information

Item Value
RNA id XM_036975337.1
length 3749
RNA type mRNA
GC content 0.52
exon number 17
gene id pard3bb
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 82297732 ~ 82586082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTTCGGGAACTGGTCAGAGCTGAAAGGAACAGAcaggaactttttttttttttacttacaaAAGTTAACCATCGACTAAAGTCTGACCAGCTACGTTGATAACTTTATCTTTAcacccaaaatatatatattatatatatatatcaaaacatattttaaaaagtaCTCTTATTACAGTATACGTTTACTGGTGCGAATCAGAACACGAAACCGGCctaaagaaggaggaggagaagaagaagaagaagaagaagaaggaggagaaggaacaAGGAAAACTTGTGGAATAGTGATACCTGAGCCCGTTACGTTAGTATCCATCTTTTCCCCAAGTCAACTTGGTAAAACACGTTTATAAAGTGTGATCAGCTACCTAATTtagatatagatattttttatatatatatatatgacggTTTTTACTCACTTCTTTGCTgacttgtttagctagctaacagtatctAACGTTTTAGTTAGTTGGAACTTTGTTGGTTAGCGAGTTGTTGCTAGGTAGCTGCTAGCGATAGCATCACATAGACTATATGTGATAGCATCTTGCTACATGACTTTGGTGTGGATGCTAGTCAAATGAATATAAAAATAAGTTAGCATATCTGCTACTGTACAAGTAACTGCAGCTGGCTAGCTATTAGCTATATGATGATATATAATAGCGCTTCGTGGGAATCTATTCGTTGAGCATTTTAGAGTTACTAACCTGACACAAGTGTACAGGATATAAATCATTATTTGCATTCCGTGAGTCAAGACAAAACTCAAAAACACCTGTTGATGCAGAGAAAGTGATCAAGGAAGGAACTTCTGGACATTCCAAAAAGCGCTAACTTGAATGAagaaaccaccaccaccatcatcatcatcatcatcatgaaagTGACAGTGACATTTGGACAGACGAGTGTCGTGGTTCCGTGTAAGGAGGGATGGAAAGTCCGTGATCTCATTCAACAAgccacacagagatacagaaagTTATTGGAACAGGAGGGTGACTTCCTGGTTCGTACCCACCATGTGGAGTACTGTGACGGGGGCATCCTGGACCCTGATGATGTACTGACTGACCTGGTGGAGGACAGAGACAAGcTGATGGCCGTCTATGAGGAGCAGGAGGCCCAGCGGAGAGGAGCTGTGAGTCCCAGAGCAGGAGTAACAGGAAGAACCAGCCAAGACCCCTATGACGCCGAGGTCTCCGTCTTCCAGCCaatcagaggaggagagatagaggtcAACTCCTCAGCTCTTAAATCCAACACCCCCCTGCTTGTAAGGAGCAGCAGTGAATCAGCCCTCAGCCCCCCAGTGGAGACGTCACAGCCCCCGCAGCCTCAGGAGCCCAACGACAGGCCTGGCCCTGAACCCCCCACGGGGGTGAACCATGGACTGGACAAGACAGGAGGACACAGAGCTGATGTCTCGACTTCCAAACTCAACACATTCTCTCTCAgCCTGACCAAGACAGTGGAGATCTCAGGAGAACACGGTCCGCTGGGGATCCACGTTGTTCCTTATGTCTCCTCTCTCAGCGGACGgGCTCTGGGCCTGCACATTCGTGGTGTGGAGGAGAACAGTCGTTCTAAGCGAGAGGGCATCTTCCAGGACGATGAGTGCATTGTTCAAATCAATGATACAGAGTTAATGGACAAATCCTTTACCCAGGCACAGGAAGTGTTCCGTTATGCTATGCGGTCCCCCATGGTGCGTCTGGAAGTAGTTCCTGTCTCCAACAGGGAGAGGTACGAGAAGAGCCTGATTGGGCAGCTCTTCAACCAATCAGGCAGTCCCAAAGCCACACCCAAGACTTCCTCTAAGGAGCCTCCTTCAATCAAACCTGCCTTTAAGCCCTCTGACTCTTCTACTGCCCGAATGGCTGAGGACAGCAGCAGCCTAGAGGGCCGACCAATGGGATCCCCCCATCTCGCCCACCCTGTCCCCGTCAGCCTATCGCCTGTCCCCAAGGAGAAGAGTGACAGCCCACTCCTGAAGAGGAGTCCCACCTTCTCTACCCTGGTGGGCTTCACCAGCAAGAAGGGAGGGAAGAGACTGAAGATCGATTTAAAGAAAGgTCCCGAGGGTCTGGGCTTCACAGTGGTGACCAGGGACTCGTCTGTCCACGGTCCTGGTCCTATCCTGGTCAAGAACATCCTGCCGCGCGGGGCCGCCGTCAAAGATGGACGCCTGCAGTCAGGTGATCGGATCCTGGAGGTGAATGGTGTGGACATCAGCAGGCGCAGCCAGGAGGAGTTGGTATCCATGTTGAGGAGCACCAGACAGGGAGACAGTGTCGCTCTGCTTGTGGCCAGACAGGAAGATGTTTTCCTGCCCAGAGAACTGaaggaggaggaggctcgtgctgtcctgctgtctgaGGAAGGGAAGGAGCAGCTGATGTTTGAGGTTCCTCTGAATGACACAGGGTCCGCTGGTCTAGGCATCAGCCTGAAGGGCAACAAGTCCAGGGAGACAGGAGAAGACCTGGGCATCTTCATCAAGTCCATCATCCATGGTGGAGCTGCGTACAAGGACGGTCATCTGCGTGTCAACGACCAGCTGATAGCGGTGAACGGAGAGTCTCTACTGGGGAAGTCGAACCATGAAGCCATGGAGACCCTGAGGAGATCCATGTCTATGGAGGGGAACTTGAGGGGCACGATACAGCTGGTGGTGCTACGAGCCCTGGTCCAATCAGAGGATCCATTTGTCCCTTCGAACCAGTCTTTTGATGCCTCTGTCAGTTGCCCAGCCAGATCAGCTAACACCTCAGCCCAGCTGCCTGTGGTCAACAACGTCATCTATGAGAGATCTAATGtcttTAATGGAAGTTCCGCCCACGTTGGTGAAGAGGATGATGACGAGGAGCTGACTCTTATATCTCCCCGTCAGGAAGCCCTGAGTCTAGCCCCAGGGGATAGCTCCACCAGGCCCATCCCTGGACCAGCCCCAGGGGATAGCTCCACCAGGCCCATCCCTGGACCAGCCCCAGGGGATAGCTCCACTAGGCCCATCCCTGGACCAGCCCCAGGGGATAGCTCCACTAGGCCCATCCCTGGACCAGCCCCAGGGGATAGCTCCACCAGGCCCATCCCTGGACCAGCCCCAGGGGATAGCTCCACCAAGCCCATCCCTGGACCAGCCCCAGGGGATAGCTCCACCAGGCCCATCCCTGGACCACAGCTGGCCCAGTTTCAGTTCCACCACACCAAGACCTCCAAGACCTCCAAGAGCATGGACCTGGTGGCAGATGAAAGCAACGTGGGATCACTAGCAGGCCACAGGTCAGAGCCCTCCACGGCCGTGGACCTTGGTCCTACCTTGGGTTTGAAGAAGTCCAGTTCTCTGGAGAGTCTGCAGACGGCCATGTCAGAGGTCCGGAAGAATGAGCCCCTCCCCTTTCACAGGCCACGCCCCCACATGGTCAGGGGGAGGGGCTGCAACGAGAGCTTCAGAGCGGCCATTGACAAATCTTACGACGGACCAGCTGATGAAGATGATGatGACCTGTCAGACCAGAGTTCGGGACGGGACACCCCTGCCAGCGGCTCCTCTCGCCAGGGcgtgggggaagaggagaggcaaGACAAGAAGAAGAAGGCCAAAGGAAAGAAGAAAGAGAAGCAGTCCAAAAGTAAAGGGAAGAAGATAACTGAGGATGTGGACGAGTCAGACAAGAAGGCCAAGAAGAAGAAAGGTTTTGGTTTACTGAGGTGAGGCCATTTCCTGTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU344841 lncRNA downstream 15205 82282311 ~ 82282527 (-) True G303797
TU344840 lncRNA downstream 18359 82279171 ~ 82279373 (-) True G303796
TU344838 lncRNA downstream 21717 82275695 ~ 82276015 (-) True G303794
TU344827 lncRNA downstream 28118 82269412 ~ 82269614 (-) True G303783
TU344826 lncRNA downstream 28845 82268497 ~ 82268887 (-) True G303782
TU345136 lncRNA upstream 8530 82594612 ~ 82595707 (-) True G304038
TU345147 lncRNA upstream 36896 82622978 ~ 82627649 (-) True G304044
TU345178 lncRNA upstream 85413 82671495 ~ 82671743 (-) True G304068
TU345182 lncRNA upstream 88967 82675049 ~ 82675377 (-) True G304072
TU345185 lncRNA upstream 94907 82680989 ~ 82681209 (-) True G304075
XM_036975333.1 mRNA downstream 154651 82105898 ~ 82143081 (-) True LOC110520662
XM_036975334.1 mRNA downstream 154655 82105898 ~ 82143077 (-) False LOC110520662
XM_036975331.1 mRNA downstream 257033 81994051 ~ 82040699 (-) True LOC110510426
XM_021584685.2 mRNA upstream 158772 82744854 ~ 82747734 (-) False LOC110505453
XM_036965260.1 mRNA upstream 319404 82905486 ~ 83193706 (-) False LOC110504940
XM_036975345.1 mRNA upstream 897371 83483453 ~ 83539175 (-) False ttll4
XM_036975348.1 mRNA upstream 897371 83483453 ~ 83539354 (-) False ttll4
XM_036975344.1 mRNA upstream 897371 83483453 ~ 83539355 (-) False ttll4
TU344667 other downstream 274281 82022829 ~ 82023451 (-) True G303665
TU344665 other downstream 275467 82021388 ~ 82022265 (-) True G303663
TU343486 other downstream 1575109 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 1576051 80720717 ~ 80721681 (-) True G302724
TU343413 other downstream 1614546 80680986 ~ 80683186 (-) True G302660
TU345254 other upstream 159162 82745244 ~ 82747738 (-) True LOC110505453
TU345368 other upstream 245288 82831370 ~ 82851751 (-) False G304204
TU345446 other upstream 363987 82950069 ~ 82951356 (-) True G304264
TU346425 other upstream 1369662 83955744 ~ 83986517 (-) True abi2a
TU346535 other upstream 1493939 84080021 ~ 84080484 (-) True LOC110504983

Expression Profile