RNA id: XM_021584685.2



Basic Information


Item Value
RNA id XM_021584685.2
length 1612
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC110505453
representative False

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 82744854 ~ 82747738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTCAGGTGGGGACGAATCGCAAAGGAAGCAGAGGAGCGACTGGCACCGCACGGCACGGACGGACAAATTAGAACAAAAGAGGGGAAAAGTATATTGTCAAGAAAGTGATAACGTAacgttttattattatttatttagaaAAACTGAAACATTAGACAAACAGTAGTGTTTTAAAACTATCTCGGTGAGATGCTGTTTCGTTTCGCCTAAAACAACTCTAATCCAGCAATCATAACCCAAAAGAATAATTTGAGTTGGTGTAAAGTCTCAGGAAAAGTACACAATGGCGAAATCTAAGCATTTTGGAATCGACGCGCTGTTGGCGCACCGGGTGGACCGagacagctccccgggactgtgTTCTGAGGACAACCCATTCTCGTGCCGCCGGTCGGAGACCCAATCCCAGCGGAGGACCACCAGCGGTATCCACATTCAGACCGGGATTATCCCCAAACAGGGTCTATTGAATTTCTCTCACCAGGGACTGACCCAGCTGTCTCAGGGGGCCATCCCTGGAATGTATCCCACCCACATGTACCCCGTCGCGGCTCTGAGTGGCCAGCACACAGCCTTCGCCTATCCCAGTTTCGCCCAGCCGTACCCGGAGCACCTAAGGGCAGCAGTTATGGCTGGGTTTCCGCTAGAACACTGGATTAGAGCTGGAATGATGATGCCAAGACTCGGAGACTATGGTGCCTCTTCTCAGGCCAGTCTGATGGGGAAGTGTCGTAGGCCCAGAACAGCCTTCACCagtcaacaactactacagctggAGAACCAGTTCAAACTCAACAAATACCTGTCCAGACCTAAACGCTTTGAGGTGGCCACCTCTCTCATGCTCACAGAGACACAGGTGAAGATCTGGTTCCAGAACAGGCGTATGAAGTGGAAGCGGAGCCGCAAGGCCAAGGAGCAGGCAATCAAGGGCCAAGGTGACTCCGACTGTCCTCACGGGGGGAAGCAGGGCAGCAACACCGGGTCTGGAGACACCCGTAACTCTGGTACCCTGGACGATGAAGATGAGGAGGATCTGGAAGCAGGGGAAGAAGATGATGCGTTAAGTGCTGATACCGTAGGAGCTGGAGTGGGTTTACTGTCTCGCCCTACACATTTCCTGAGGCACACTGCGACAGAGCTCAGCTATAGTTCTCATGGTTCCTACTCAGACAATGAACTAGAGGACAGTGGGCCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGACAGTAGGCCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGACAGTAGACCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGAGAGTGGGCCTGGACTGGAGAGAAGGGTTGAGGTGGGGTTATGAGGACAGTAGGCCTGGACTGGAGAGAAGGGTTGAGGTGGGGTTATGAGGACAGTAGGCCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGACAGTAGACCTGGACTGGAGAGAAGGGTTGGGGTGGAGTTATGAGGACAGTAGGCCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGACAGTGGGCCTGGACTGGAGAGAAGGGTTGGGGTGGGGTTATGAGGAGAGTGGGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU345185 lncRNA downstream 63645 82680989 ~ 82681209 (-) True G304075
TU345182 lncRNA downstream 69477 82675049 ~ 82675377 (-) True G304072
TU345178 lncRNA downstream 73111 82671495 ~ 82671743 (-) True G304068
TU345147 lncRNA downstream 117205 82622978 ~ 82627649 (-) True G304044
TU345136 lncRNA downstream 149147 82594612 ~ 82595707 (-) True G304038
TU345258 lncRNA upstream 11522 82759256 ~ 82759546 (-) True G304133
TU345262 lncRNA upstream 13185 82760919 ~ 82761408 (-) True G304137
TU345384 lncRNA upstream 28879 82776613 ~ 82776903 (-) True G304217
TU345385 lncRNA upstream 54950 82802684 ~ 82803096 (-) True G304218
TU345387 lncRNA upstream 55402 82803136 ~ 82805098 (-) True G304219
XM_036975335.1 mRNA downstream 158772 82297732 ~ 82586082 (-) False pard3bb
XM_036975336.1 mRNA downstream 158772 82297732 ~ 82586082 (-) False pard3bb
XM_036975337.1 mRNA downstream 158772 82297732 ~ 82586082 (-) False pard3bb
XM_036975338.1 mRNA downstream 158773 82297733 ~ 82586081 (-) False pard3bb
XM_036975339.1 mRNA downstream 247229 82297732 ~ 82497625 (-) False pard3bb
XM_036965260.1 mRNA upstream 157752 82905486 ~ 83193706 (-) False LOC110504940
XM_036975345.1 mRNA upstream 735719 83483453 ~ 83539175 (-) False ttll4
XM_036975348.1 mRNA upstream 735719 83483453 ~ 83539354 (-) False ttll4
XM_036975344.1 mRNA upstream 735719 83483453 ~ 83539355 (-) False ttll4
XM_036975346.1 mRNA upstream 735719 83483453 ~ 83539355 (-) False ttll4
TU344968 other downstream 430773 82297756 ~ 82314081 (-) True pard3bb
TU344667 other downstream 721403 82022829 ~ 82023451 (-) True G303665
TU344665 other downstream 722589 82021388 ~ 82022265 (-) True G303663
TU343486 other downstream 2022231 80721738 ~ 80722623 (-) True G302725
TU343484 other downstream 2023173 80720717 ~ 80721681 (-) True G302724
TU345368 other upstream 83636 82831370 ~ 82851751 (-) False G304204
TU345446 other upstream 202335 82950069 ~ 82951356 (-) True G304264
TU346425 other upstream 1208010 83955744 ~ 83986517 (-) True abi2a
TU346535 other upstream 1332287 84080021 ~ 84080484 (-) True LOC110504983
TU346587 other upstream 1433317 84181051 ~ 84182035 (-) True G305189

Expression Profile