RNA id: XM_036965260.1


Basic Information

Item Value
RNA id XM_036965260.1
length 6333
RNA type mRNA
GC content 0.51
exon number 31
gene id LOC110504940
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 82905486 ~ 83193706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTCCTCTGTCCTGAAGGCAGCAAATCGTGTGGCGGACAAGTAGACGCCAGTGGCGCCGGGTACATCACCACCCCAGGGTACCCTCTGGAGTACCCCCCACACCAGAACTGTCGTTGGGTCGTCACCGCCCCAGAACCCTCCCAACGTGTCGTCCTCAACTTCAACCCCCACTTCGAACTGGAGAAGCTGGACTGCAgATATGACTACGTAGAGATCCGCGATGGGAACAGCGAGAAGGCAGACCTGTTGGGTAAACACTGCAGTAACATCGCCCCTCCAGCCATCATATCCTCAGGCCCTGTCCTCCTCATCAGGTTCGTCTCTGACTACGCTCACCAGGGGGCTGGCTTCTCACTGCGGTATGAGATCTTCAAGACTGGTTCAGACTGCTCCCGTAACTTCACCAGTCAGAACGGGATCATTGAGTCTCCGGGGTTCCCTGATAAATACCCTCATAACCTGGAGTGTTCCTTCATTATCATCGTGCCCCCGGCCATGGACTTGACCCTGACCTTCCTGACCTTTGACCTGGAGAATGACCCCCTGCCCGGGGGAGAAGGAGACTGCAAGTACGACTGGCTGGAGGTCTGGGACGGTCTGCCACAAGTGGGTCCTCTGATAGGACGTTACTGTGGAACTAAGATCCCTCCTGAGATGACGTCGTCTACAGGtatcctgtctctgtccttccacACGGACATGGCCGTGGCCAAAGATGGCTTCTCTGCTCGCTACAACATGACACACAAAGAGGTCAGCGACAcTTTCCATTGCAGTAACGCGTTAGGTCTGGAGTCAGGGAAGATCTCTGACGACCAGATCACTGCCTCCTCATCCTTTTACGACAACACCTGGTTGCCACGGCAAGCCCGTCTTAACAACAATAACAACGCGTGGACCCCAAACGAGGACAGCAGCAAAGAGTTCATCCAGGTGGATCTCCATGTCCTGAAGGTGTTGACGGGTATCGCTACCCAGGGAGCGGTGTCCAAGGAGACCCAGAAGTCCTACTACGTCATCACCTTTAAGTTGGAGGTCAGCACCAACGGAGAGGACTGGATGGTCTACCGATACGGCAAGAACCACAAGGTGTTCCATGCCAACACAGACTCGACCGAGGTGGTTCTAAACCGGATCCCCCTGCCTGTTCTGGCCCGCTTCGTACGCGTCAGACCCCAGACCTGGAAGACAGGCATCGCCCTGCGCTTGGAGCTCTACGGGTGTCAGATCACCGACGCTCCATGTTCTGAGATGCAGGGGATGCTGTCCGGCCTGCTGCCCGACTCCCAGATCACAGCGTCATCCATGAGGGATGTCCACGGCTCCATGGGGACGGCCAGGCTGGTAGCCAGCAGGTCAGGATGGTTCCCTAGCCCAACACAGCCTCTGGCCGGGGAGGAGTGGCTCCAGGTGGACTTGGGGGTCCCCAAGACCGTACGAGGCGTCATCACCCAGGGAGTCAGGACAGTGGAGGGGAGTACCTCGGCTGAGAACAGGGCCTTCGTCAGGAAGTACCGCGTGTCTTACAGCCTGACGGGCAAGGACTGGACTTTTATACTGGACAGAAAGACCAGCCATCCTAAGATTTTTGAGGGAAACACACACTACGACACTCCAGAGATCCGTCGGTTTGAGGAGATAACGGCTCAGTTCATCAGGATCTACCCAGAGAGGTGGTCTCCTGCTGGGATAGGGATGAGGCTGGAGGTCCTGGGATGTGAACTGCCAGAGACCACCACTCTACCTGACACTGCCACACcgaccctgccacgtttagaggataccaccgctgcccaaagaggagaggGCACTACTCCTTGGTCTCTGTGTGACTTTGAGTCCAGTCTGTGTGGCTGGATCCCAGACAGCGTGTCAGAGCTGAGCTGGTCTCTCCACAGTGGCAGCCTCTCGTCTGGTCTCACACCTAGTCTggatctacctctctctctgcccaaagACGACGTGGGTAACTTCCTCCACATCGAGGCCAGCCCCAGGACAGAGAGGCAGCGAGCCCGTCTGGTGAGCCCCGCTGTGGGGCCTGAGAGGGGGCCGCTGTGCCTGCTCTTCAACTACCAGCTCCAGGGGCCCGAGAACCAGGGGCTGGGGTCCCTCAGGATCCTCCTCAGAGACAACGACCGGGAGGAGACTCTTCTCTGGGCACTCGGAGGAGACCAGGGGCCCGTGTGGAAGGAGGGACGCACCATTCTGCCCCAGTCACCCAAAGAGTACCAGGTGGTGATTGAGGGGTACTTTGAGCACGGAAACAGAGGACACATCTGGATAGACAACATTCACATGAGCTCTAGTACAGAGCTGGAACAGTGCACACGTAAGTCCTCCACACCTAATCCTAAACctcactgctctgtctgtctgggaggggCAGGCTGGCTGAAGTACAGCAAAGCACAGTCagagaaccagacagttagaGAACCAGACAGTCAGAGAACCAGacagacccatgccaaatctccccctctcctgagggggactaggttttgtcgtgccctcttcaAGTCTATCCTACAGCGTATGGTGGAGACCCTGGACAGGTATGGTATTGACCCTAGAGAGCTGACCCCCCAGCAGCTCTACAGACTGGCTGTGGTGCTGCAGCTGATGCAGGCTGAGGACAAGGACAACATAGAGCCACTTACCAATGATCCAAAGAAGACTCAGCAGGTTCTTAAAAGCAGTGACACAGTGCCCGAAAAGGTAGAGAAAGCTCCCGTCCTTGTCCGTGGGCCCAAAGTGGTCCCTACCCTGGCCTCAGCTGCCACTAGTCCCCCCATCACGGCACCTCTAGAGGGCAGCGTGACGGCCAAGGACTCCTCCGTCTCTGTGGAGGATGTGaaagagaaggtgaaaagctCCAATATCCCAGCTGCTGAGAGGGGAACAGCAGACAGGGAGAAGTATGGATACATCGTCACCAACCAGAGTCCTCTCAGTCTGTATAATGGGGTGAAACTACTGGGCGTACTTGCAGAGAGGATCCACCTGACTACCAGCAGCTTCATCAACATCAGTGTGGTGGGCCCTGCCCTGACGTTCAGGATCAGGCAGAACCCTCAGAACATGAGTGCAGAGGATATGGCTGAGAAGGCTGCATCTCAGAAGTCCTTTCTGGAGTCTGAGACAGGGTTGAAGATACTGCAGACTGGTGTGGGAGAGAGGAGCGAGGGTCATGGGCTGCCCCATGCCACGCGGGTGAGGGAGGGCTCCAGTGGGCTGGTACTGACGCTGGTGTCCATGGCGTGTGTGGgcggggtggtggtggtagcattGACCATCGCCTGTCTCCGACACCATGCCAAGCAGCTGGCCTCAGGGAAACTGGGCCTCGGACCCGAGGGAGGACCGGAGACACACGTTGACTACCAGGAGCTCTGCAGGCAGCACATGGCAGCCAAGCCGTCGTTCAGTCGTCAGGAGGCGGTGGGCGGGGGAGCGGGGGGTCGGAGGGGGACAGACACCTCCAGGGTGAGCAGTGTGTCGTCCCAGTTCAGTGACGGCCCACAACACAGCCCCTCCTCACACAGCAGTACGCCCTCCTGGAGCGAGGAGCCCGCCCAGTCCAACATGGACATCTCTACTGGTCACATGATACTGGCCTATATGGAGGATCATCTGGAGAATAAGGACCGTCTGCTGAAGGAGTGGGAGGATCTTTGTTCCTACCAGGCTGAACCCAGTGCTGTCACTGTAGCACAGAGTGAAGCCCACCTGGAGAAGAACCGCTGTTCGGACTCTCTTCCCTATGATCATTCCCGTGTGAAATTGAAGGCAGAGAGCAACTCCACGAAGGAAGACTACATTAACGCCAGCACCATAATTGACCATGACCCTCGACTGCCTGCTTACATCGCCACCCAGGGACCACTGGCACACACAATCGCTGACTTCTGGCAGACAGTCTGGGAGAATGGCTGTACAGTGATAGTGATGACGACAGCCCTGGTTGAGGATGGAGAGATTCAGTGTGTTCGCTACTGGCCTGACGAGGGATCCTCCCTCTACCACATCTACGAGGTGAATTTGGTCTCTGAACACATCTGGTGTAAAGACTTCCTGGTTCGTAGTTTCTACCTGAAGAACGTTCAGACCCAGGAGACTCGTACCTTGACACAGTTCCACCTGCTCAGCTGGCCCTCCAACGGAATCCCTACCTCCACACGCCCTCTGCTGGACTTCCGCAGGAAGGTGAATAGGTGCTACAGAGCTCGATCCTGCCCCATCATCGTCCACTGCAGTGACGGCACTGGCAGAACGGGAACCTACATCCTTATTGACATGGTCCTCAATCGCATGGCTAAGGGCGTGAAGGAGATTGATATTGCTGCGACATTGGAACACATTCGGGATCAGAGACCGAACTTAGTCCGCACCAAGGATCAGTTTGAGTTTGCACTGACTGCCGTGGCAGAAGAGGTCAATGCCATCCTGAAGGCTCTGCCACAGTGAACCATGtgtctaccacctctaccacctcgtGTGCCAGAACCTTACAACTAGAATTACCATGAAAGTTATGCATCATAATACCAATGACGGCCATATTGAGTGTCCCCCATGATTGTACCATTCCCACTGCTGTGGTCTGACGGGTTGTTGACGAtctagtaattctatttctatggccatTATTAACCCTTCCTCTACATCCAGATACACAACCAGGGAGGAACTACATTTCCCAGAGTCCATTACTATTACACCAATGACCATAGGAGTCAGCAAGACCGTACAAACAGATCTGAGGCCAGGCTGCTATCATAATGAAATTAAATGAGGTTTTAAAAAATCCTGTAGATTATTCCGTTCAGGCAAAAACACTTTAAATGTACAGTAGGACCCCTTTACAGTGTCTTGTTATTCAATTTTAGATTGAGATTTGGTCTTAAAATACTGTGACTTGATTCTGTAACATTTCTCCTTTCTCTGATTCTCAGTCTCAGACATGTCTCACTAGAGATATTACAATTACCATGATCCCTCCTGttctgttgtcatggagatgtTGTATTACCATGATCCCTCCTGttctgttgtcatggagatgtTATATTACCATGATCCCTCCTGttctgttgtcatggtgatgttgtCATGGAGATGTTGTATTACCATGATCCCTCCTGTTCTGGTGTCATGGAGATGTTGTATTACCATGATCCCTCCTGTTCTGTTGTTATGGAGATGTTATATTACCATGATCCCTCCTGttctgttgtcatggtgatgttgtCATGGAGATGTTATATTACCATGATCCCTCCTGTTCTGGTGTCATGGAGATGTTGTATTACCATGATCCCTCCTGttctgttgtcatggagatgtTATATTACCATGATCCCTCCTGttctgttgtcatggtgatgttgtCATGGAGATGTTATATTACCATGATCCCTCCTGTTCTGGTGTCATGGAGATGTTGTATTACCATGATCCCTCATGttctgttgtcatggagatgtTGTTTAAAACCACATTGTACTCTAGAAGGTATACATCCATATAACATAACAGCATGAGGCCCGTGGCTTGtttatgcaggaagacagagaccCTCACTATGGTAAGGATGAAGTGAGTGACATACTAGTGTACGATACGCTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAACATGATTGTCTGTTATTAAACTGTAACTAAACCCTAGTGTACAATACGTTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAACATGATTGTCTGTTATTAAACTGTAACTAAACCCTAGTGTACAATACGTTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAACATGATTGTCTGTTATTAAACTGTAACTAAACCCTAGTGTACAATACGTTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAACATGATTGTCTGTTATTAAACTGTAACTAAACCCTAGTGTACAATACGTTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAAGTTTAACTCTAAGCCCAATGATTTATTTATATCCATTTTGTAATTGAACTATTACTGTACACTGACTACCTAATCACTCACATCTGAATCATATCAATTAGTGTCTTTAATAATGTTACTGTAAAACCTCTGTGTTTATTGTAAATAATTCACCTGATTATTTATTATATGTTTATTAATGTAGCAAACACATAGAAAACAACTATAAAAATATTTTTCACTCATCGTATGTAATTAAATCTCTATCGTGATGTGGTGCAACAGCATAAAGGGGTCTGACTGTGTTCTTTTCCATTCACATCCCATAATACTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345432 lncRNA downstream 444 82903820 ~ 82905042 (-) True G304250
TU345415 lncRNA downstream 5053 82900219 ~ 82900433 (-) True G304243
TU345364 lncRNA downstream 53735 82833072 ~ 82851751 (-) True G304204
TU345409 lncRNA downstream 65666 82839051 ~ 82839820 (-) True G304237
TU345396 lncRNA downstream 85056 82820149 ~ 82820430 (-) True G304228
TU345639 lncRNA upstream 2003 83195709 ~ 83196015 (-) True G304426
TU345642 lncRNA upstream 6394 83200100 ~ 83220989 (-) True G304429
TU345694 lncRNA upstream 89161 83282867 ~ 83283273 (-) True G304465
TU345696 lncRNA upstream 90015 83283721 ~ 83283938 (-) True G304467
TU345697 lncRNA upstream 90418 83284124 ~ 83284577 (-) True G304468
XM_021584685.2 mRNA downstream 157752 82744854 ~ 82747734 (-) False LOC110505453
XM_036975335.1 mRNA downstream 319404 82297732 ~ 82586082 (-) False pard3bb
XM_036975336.1 mRNA downstream 319404 82297732 ~ 82586082 (-) False pard3bb
XM_036975337.1 mRNA downstream 319404 82297732 ~ 82586082 (-) False pard3bb
XM_036975338.1 mRNA downstream 319405 82297733 ~ 82586081 (-) False pard3bb
XM_036975345.1 mRNA upstream 289747 83483453 ~ 83539175 (-) False ttll4
XM_036975348.1 mRNA upstream 289747 83483453 ~ 83539354 (-) False ttll4
XM_036975344.1 mRNA upstream 289747 83483453 ~ 83539355 (-) False ttll4
XM_036975346.1 mRNA upstream 289747 83483453 ~ 83539355 (-) False ttll4
XM_036975347.1 mRNA upstream 289747 83483453 ~ 83539355 (-) False ttll4
TU345368 other downstream 53735 82831370 ~ 82851751 (-) False G304204
TU345254 other downstream 157748 82745244 ~ 82747738 (-) True LOC110505453
TU344968 other downstream 591405 82297756 ~ 82314081 (-) True pard3bb
TU344667 other downstream 882035 82022829 ~ 82023451 (-) True G303665
TU344665 other downstream 883221 82021388 ~ 82022265 (-) True G303663
TU346425 other upstream 762038 83955744 ~ 83986517 (-) True abi2a
TU346535 other upstream 886315 84080021 ~ 84080484 (-) True LOC110504983
TU346587 other upstream 987345 84181051 ~ 84182035 (-) True G305189
TU346768 other upstream 1087777 84281483 ~ 84300976 (-) True si:dkey-230p4.1
TU346797 other upstream 1111598 84305304 ~ 84308414 (-) True LOC110520676

Expression Profile