RNA id: TU345422


Basic Information

Item Value
RNA id TU345422
length 1704
lncRNA type sense_over
GC content 0.41
exon number 5
gene id LOC110504940
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 82905486 ~ 83193706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACAattagattacattttttttttaattaaaaaacgtttttaaaagggtcttggaacctctaaccctgacaaTTTGACTGGAAAACTCATGGGTACACACGCAATGTCTGCCTGTCCACCCATTATGACATCATTGAATAGGGACACCCGTTCTATAGATCCCATTTCTGCGGTCTTTATGACGTGCCGTGTGATCTGACGAGGTATTCCCTGTCTCGTACAGTGACGGCACTGGCAGAACGGGAACCTACATCCTTATTGACATGGTCCTCAATCGCATGGCTAAGGGCGTGAAGGAGATTGATATTGCTGCGACATTGGAACACATTCGGGATCAGAGACCGAACTTAGTCCGCACCAAGGATCAGTTTGAGTTTGCACTGACTGCCGTGGCAGAAGAGGTCAATGCCATCCTGAAGGCTCTGCCACAGTGAACCATGtgtctaccacctctaccacctcgtGTGCCAGAACCTTACAACTAGAATTACCATGAAAGTTATGCATCATAATACCAATGACGGCCATATTGAGTGTCCCCCATGATTGTACCATTCCCACTGCTGTGGTCTGACGGGTTGTTGACGAtctagtaattctatttctatggccatTATTAACCCTTCCTCTACATCCAGATACACAACCAGGGAGGAACTACATTTCCCAGAGTCCATTACTATTACACCAATGACCATAGGAGTCAGCAAGACCGTACAAACAGATCTGAGGCCAGGCTGCTATCATAATGAAATTAAATGAGGTTTTAAAAAATCCTGTAGATTATTCCGTTCAGGCAAAAACACTTTAAATGTACAGTAGGACCCCTTTACAGTGTCTTGTTATTCAATTTTAGATTGAGATTTGGTCTTAAAATACTGTGACTTGATTCTGTAACATTTCTCCTTTCTCTGATTCTCAGTCTCAGACATGTCTCACTAGAGATATTACAATTACCATGATCCCTCCTGttctgttgtcatggagatgtTGTATTACCATGATCCCTCCTGttctgttgtcatggagatgtTATATTACCATGATCCCTCCTGttctgttgtcatggtgatgttgtCATGGAGATGTTGTATTACCATGATCCCTCCTGTTCTGGTGTCATGGAGATGTTGTATTACCATGATCCCTCCTGTTCTGTTGTTATGGAGATGTTATATTACCATGATCCCTCCTGttctgttgtcatggtgatgttgtCATGGAGATGTTATATTACCATGATCCCTCCTGTTCTGGTGTCATGGAGATGTTGTATTACCATGATCCCTCCTGttctgttgtcatggagatgtTATATTACCATGATCCCTCCTGttctgttgtcATGGAGATGTTGTATTACCATGATCCCTCATGttctgttgtcatggagatgtTGTTTAAAACCACATTGTACTCTAGAAGGTATACATCCATATAACATAACAGCATGAGGCCCGTGGCTTGtttatgcaggaagacagagaccCTCACTATGGTAAGGATGAAGTGAGTGACATACTAGTGTACGATACGCTACACCAGTTTCTCTAAGGGGCTGGCGTTTACCTCTAAGTTTAACTCTAAGCCCAATGATTTATTTATATCCATTTTGTAATTGAACTATTACTGTACACTGACTACCTAATCACTCACATCTGAATCATATCAATTAGTGTCTTTAATAATGTTACTGTAAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345432 lncRNA downstream 631 82903820 ~ 82905042 (-) True G304250
TU345415 lncRNA downstream 5240 82900219 ~ 82900433 (-) True G304243
TU345364 lncRNA downstream 53922 82833072 ~ 82851751 (-) True G304204
TU345409 lncRNA downstream 65853 82839051 ~ 82839820 (-) True G304237
TU345396 lncRNA downstream 85243 82820149 ~ 82820430 (-) True G304228
TU345433 lncRNA upstream 1480 82909520 ~ 82909899 (-) True G304251
TU345439 lncRNA upstream 15603 82923643 ~ 82923878 (-) True G304257
TU345454 lncRNA upstream 64445 82972485 ~ 82972812 (-) True G304271
TU345548 lncRNA upstream 74373 82982413 ~ 82998287 (-) True LOC110504940
TU345559 lncRNA upstream 116237 83024277 ~ 83042117 (-) True G304356
XM_021584685.2 mRNA downstream 157939 82744854 ~ 82747734 (-) False LOC110505453
XM_036975335.1 mRNA downstream 319591 82297732 ~ 82586082 (-) False pard3bb
XM_036975345.1 mRNA upstream 575413 83483453 ~ 83539175 (-) False ttll4
XM_036975348.1 mRNA upstream 575413 83483453 ~ 83539354 (-) False ttll4
XM_036975344.1 mRNA upstream 575413 83483453 ~ 83539355 (-) False ttll4
XM_036975346.1 mRNA upstream 575413 83483453 ~ 83539355 (-) False ttll4
XM_036975347.1 mRNA upstream 575413 83483453 ~ 83539355 (-) False ttll4
TU345368 other downstream 53922 82831370 ~ 82851751 (-) False G304204
TU345254 other downstream 157935 82745244 ~ 82747738 (-) True LOC110505453
TU344968 other downstream 591592 82297756 ~ 82314081 (-) True pard3bb
TU344667 other downstream 882222 82022829 ~ 82023451 (-) True G303665
TU344665 other downstream 883408 82021388 ~ 82022265 (-) True G303663
TU345446 other upstream 42029 82950069 ~ 82951356 (-) True G304264
TU346425 other upstream 1047704 83955744 ~ 83986517 (-) True abi2a
TU346535 other upstream 1171981 84080021 ~ 84080484 (-) True LOC110504983
TU346587 other upstream 1273011 84181051 ~ 84182035 (-) True G305189
TU346768 other upstream 1373443 84281483 ~ 84300976 (-) True si:dkey-230p4.1

Expression Profile