RNA id: XM_036975346.1


Basic Information

Item Value
RNA id XM_036975346.1
length 5997
RNA type mRNA
GC content 0.50
exon number 19
gene id ttll4
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 83483453 ~ 83539355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATACGcctacgaaacgtaacatatactAAATGGTCTGTGTGTCGGGTTTTACCTCCAGGATAATACGCCATGCTCTGAGCACGTTGAGGGAGGGAGTCCCTTGTGGTAATAGACACTTTGTTATGGTGTGAAAAGCACCACTACTACTGTTGCCACGCTTCGGGCGCAGtgGCATGGTGTTCCCCTGGTTCCCTCAATTCCCTGATGTGTCAGCCAAAGTCCATGCCAGGAGGGTGTGAGATGGCACTTGATGGCCTCCAATGGAGCTGAAGACAAGTTGAATACAAGGGCCTCCTGCTCCCGGTCATCAACTCTCATAATTCGAGCCAAGTCAGCAGTGTTTCATACTGCTGATAGTCCCACTAGGCCCTTCAGCTCGCATGAGAAGAAGACCCTTCAGTCCTGTGCCAGTGTCCCCCGAGTCACCAGTGACTCTATAGGTCAGCTGAATGCGAGGGTGGGTCAGACTCAAAACAACCACCTCCATACTGCCTCAGGGACCCCTCTACAACGTGCCTACAACCGTTCTGTGCCTGCTGCCACTTACCTAGCTAACAAGCCACAGCGTCCTGGTAGCGCAGCTGCTAATTTAGCTAATGGTCATAGTAATGGTCACTATCAACCAACTGTTCTCTCTAAGAGTACACAGATATCTAGTGCTGACATTATCTCATACAGACACAACCCTGGTGTGTTAGAGCCAACCGTAAACAGCTATCGGCCCAGCTGCAACTTGGAATCACTAAATTTAAGATCACGGATCCTGGCCCGCAAAAGAGCCTTGTCGCCCCAGCCTGCTCCCTATCCAACGTGCCCCTGTCCACCAAAGGCAGAACGTGTCCCAGACTCGCAGAACAACGCTGCTTCACAGCCTGCTGAAAGCACCACTACCACCAGCATGCCCACCAACCAGTCAGTCCCCTGGACCAGTGGCAAGCTGAGAGACAATAGCAAAGGGTTTATGAGGCCCACTATGGGTAAAGTGCCTTCCTGTCCCAGACAGGAGACTACCCAGACAAGAGACTCAGCAAAACCTTTGTCTCCCCAGACCAAATCGGCCTCCTATTGCCGTAGCGGGGACAATGGGGATGGCAAAACCCAGACTAAGTTCACACACCACCCCCCCAACACTGTGCCTTTGCAGGATAGGTCATCCCACCACCAGGATGTGTCACTGGATCAGACATGGAGGCTCCAGGACCCACATCAGTTTGAGAGCCTGATGGCAGCAGACATGGAGGGTCACTCCCAGAGGCTGGGCTTTTGTGCTGCTGTCCATGGGGCTCCTGGAGCTCCTCATAACACATCAACAGAGAGGATCAGGAAGGTCAACTCTGAGGTGGAGTTTACTGAGGCTGTGAGGAAGCTGACCCAGTCACGGAGCGCGCTCACCCCTCATCCCAGGAACGGGACTATTAATAGTTTTACTACTGGAACACCAGGGTCCAACGTGGATCCAGTCCAGATTGGCAAAGCAATGACTAATAGCCCTGTCATCTCTGTCAGCCACAGCCCTGCTCCAGCCAAACCCTCTGTACCACTCTGCCTTACTATGAGAGACCAGCCTGTGTCCATGGAGACCTCCAGTGCCTCTGGCCTCGACAGTAACACCACAACAAACAGTAGTAGCACAACAGCCTCCATGGCACCTCTACCCCATGCAGGGATAACTCCAACACAGTCCTCTACCCAGGCCAGTGCCACAGTTAGTTCTACTGCAGGGATAACTCTAACCCAGTCCCCTACCCAGGCCAGTGCCACAGCTAGTTCTACTGCAGGGATAACTCTGACCCAGCCCTATACCCGGGCCACTGCCACAGCTAGTTCTGGTGCAGGGATAACTCCAACACAGTCCTATACCCAGGACAGTGCCACAGCTAGTTCTGGTGCTAGTTCTGAGTCCGCCTCAGGTACTTCTCAGAGTCAGAGCCCTTCTGTCACCTCGGTGACCACCCAGATATCAGCCATACACCTGACCAAGGAGAGGAGCGTCCTGTCTCTACAGGGGGGCTACAGCTCCTCCCGGTCCCCCCTTGACCTGGGGGAGGAACAACAGGCTGAGTCACCTCAGCTCTCCAGTCCACAGAGTGTTGCCATGCAggaggatggagacagaggggaagaggaCTATCCTGATGATGAGCTGGAGAATGACTgcagtggtgatgatgatgatgatgGGTCTGACTGCTCCTCTATGAATGATGCCTCGTCCACAGCCTCCATACCCGTCCTGCCAAATATAACGGATGAGGAGCTGATGAGCCCTGAATTAGAGGATGAGGGGGAGCTGAAGCCAGCTCTGGTCCCCAGCATGTTCCCCCTCATTCCCCCTACACTGTATTTCAGCACTGCCAACCAGAGAGTGGAGCCCCTGCCACCAGAACAGAGGAAGCTGCTCAAATGGAAGATGAGCACTGTGACTCCCAACATAGTCAAACACACCATCGCCAGGTCACACTTTAAAGTCACCAAGAAAAGTCATGATTGGCTTGGCTGCTGGGGTCACCATATGAAGTCTCCTGGGTTCAAGGCCATCAGGGAATACCAGAAGTTAAACCACTTCCCCGGCTCGTTCCAGATCGGTCGTAAGGACCGTCTGTGGAGGAACCTGTCTAAGATGCAGGCTCAGTTTGGTAAGAGGGAATTCAGCTTCTTCCCTCGCTCCTTCGTTCTTCCTCAGGACATCAAGCTACTGAGGAAAGCCTGGGAGGACAGTGGTAGCAGGCAGAAATGGATCATCAAGCCGcctgcgTCTGCTCGTGGTATTGGAATCCAGGTTATTCACAAGTGGAGTCAGATGCCATGCAAGAGACCACTCCTGGTTCAGAAGTATCTGCACAAGCCCTACCTCATCAGTGGGAATAAGTTTGACCTGCGTATCTATGTGTATGTGACGTGTTACGACCCGCTCCGCGTTTACATCTTCCAGGACGGGCTTGTCCGCTTCGCCAGCTGCAAGTACTCGTCGTCTATGAAAAGCCTTGGCAACAAGTTTATGCACCTGACCAACTACAGCGTGAACAAGAGGAACTCCGACTATCAGAGCAATGACAGTGACAAGGCCTGCCAGGGACACAAGTGggctCTGAAGGCGCTGTGGCACTACCTGGGTTGTAAGGGAGTCAACACCACGCTGATCTGGGAGAAGATCAAGGACATCGTCATGAAAACCATCATTGCgTCTGACCCATATGTCAACACGCTGGTCAAGCTTCACCTGCGTTCCCCCTACAGCTGTCACGAGCTGTTTGGCTTTGACATCATGCTGGATGAGAACCTCAAGCCTTGGGTTCTGGAGGTCAACATCTCACCAAGcctccactccagCACCGCTCTGGACGTGGCCATTAAGGGCCAGATGATCAGAGATGTGTTGAACCTGGCGGGTTTCCTTCTGCCTCAGAGAGAAGAGGTGCTTCCCTCCGCCAGCAGCTCTGCCAGCAGTCTGTGTGGAGGGACACGGGAGAGATCCAGACCTGAGATTTCAACTGATGAGAAAGTGAAGCGGGCCTTCTACCTGAGCCAGCGCTTCGCAGATCAGGTACAGTCATGCAGCCGTCTGAAGAGCCAAGGAACTACTGGGAAGTTTCCCAGACAGGAAGTCgaCTTCTTCTCCTCCATCCTGGACGTTCTGACTCCAGAGGACGTACGTGTCCTGGCTGAGACGGAGGACGAGCTGAGCAGGAAGGGAGAGTTTGAACGGGTCTTCCCCTCCAACGGCTCCTCACGATACCTGCGCTTCTTCAAACAACCACGCTACCTCAACATCCTGCTCAACCAGTGGGAGACCAAGTacggacagaacaggagagaagGAGTCTGTGTGCTGAGGAGTCTGTGTCAGAAAGGAGTCCATCTAGGAACCACCGACCCTGCACATCTATGGTCCAAGTCGACCTATGTTCCCAAGTCTGATCACCCCAGGCAGGAGCCAAGCAGATCAAgTGTGGTGGTGAGTCACAGAACCAGGCCCCAGCCAGACCAGGAGGAGTACTGTTTCTCCCAGGAGGTCACCACCTCCCTCCTGGGCTCCTCCAGCCCCAGCCTGGCCACCGAGTCTACAGCCAGCGTGCCACCCAGAGATGAGGAGTTCGAGGGTTAACCTGCTCTCACTGCACCCTAACACTGTTGACTTCTTAAAGAAGGCATAAACACATCCCCCGTTTGGGCAGGGGATGTGAACGCCGTAGGTGTGATGGAGGGTCAAGTCAACATgaacacctttctctctctctctcgatacaTATTCCTCTTTTCACTACCATAGTCTGAACTGGAGAGGGACAAACTGCTGGGTTTtcttagtgttagtgttagtccTGGATAAGGGGGAGGGGCTTCTCTGGACCGGGTGGACAGACAGCAGCTTTGGCCAATCGGCCGAGGAGAAAATCCAAGGCTGCTCTGCCTACTTAGAGCCAGTCCAATCAGATTCCACTCCTAGGTGTGTTTACATCAAAAATACATCAACATTTATTGGTACACATTttgttattgcaggtgcagtgaaatgcttgtgtttctagcatTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGACTTGTTACAATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAAATATAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAAATATAACTGCATTTCAGGCTTGTTACTATGGGATGGGAAGATATAACTGCATTTCAGGCTTGTTACTATGGGGTGGGAAGATATAACTGCATTTCAGGCTTGTTACTATGGGATGGGTATATATAACTGCATTTCAGGCTTGTTACTATGGGATGGGTATATATAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAACTGCATTTCAGGCTTGTTACTATGGGATGGGTAAATATAACTGCATTTATTTGGCTGGTCATTTTACATATGCTTCACAATTTTTAAAATTTTGAAGTTGTAACAATAATTGTTATGAATAAATAATTTAATTAACAGTTGTTCTATCAGTCCCAGATTAGGGAAATAACTGCTCAGGTTCATACATTAAAACTGATATTTGAAGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU345887 lncRNA downstream 126 83482576 ~ 83483327 (-) True G304635
TU345800 lncRNA downstream 11210 83467511 ~ 83472243 (-) True G304562
TU345771 lncRNA downstream 60831 83422381 ~ 83422622 (-) True G304534
TU345755 lncRNA downstream 113228 83370019 ~ 83370225 (-) True G304519
TU345752 lncRNA downstream 114473 83368766 ~ 83368980 (-) True G304516
TU345952 lncRNA upstream 78011 83617366 ~ 83619684 (-) False G304687
TU345951 lncRNA upstream 78264 83617619 ~ 83619684 (-) False G304687
TU345950 lncRNA upstream 79614 83618969 ~ 83619684 (-) True G304687
TU345969 lncRNA upstream 93003 83632358 ~ 83632679 (-) True G304700
TU345970 lncRNA upstream 93436 83632791 ~ 83633095 (-) True G304701
XM_036965260.1 mRNA downstream 289747 82905486 ~ 83193706 (-) False LOC110504940
XM_021584685.2 mRNA downstream 735719 82744854 ~ 82747734 (-) False LOC110505453
XM_036975336.1 mRNA downstream 897371 82297732 ~ 82586082 (-) False pard3bb
XM_036965263.1 mRNA upstream 7567 83546922 ~ 83612879 (-) True abcb6b
XM_021598087.2 mRNA upstream 87214 83626569 ~ 83629281 (-) True LOC110520669
XM_036975349.1 mRNA upstream 99735 83639090 ~ 83643367 (-) True LOC110505466
XM_036975350.1 mRNA upstream 107976 83647331 ~ 83770550 (-) False LOC118964336
XM_036975354.1 mRNA upstream 376517 83915872 ~ 83986617 (-) False abi2a
TU345446 other downstream 532097 82950069 ~ 82951356 (-) True G304264
TU345368 other downstream 631702 82831370 ~ 82851751 (-) False G304204
TU345254 other downstream 735715 82745244 ~ 82747738 (-) True LOC110505453
TU344968 other downstream 1169372 82297756 ~ 82314081 (-) True pard3bb
TU344667 other downstream 1460002 82022829 ~ 82023451 (-) True G303665
TU346425 other upstream 416389 83955744 ~ 83986517 (-) True abi2a
TU346535 other upstream 540666 84080021 ~ 84080484 (-) True LOC110504983
TU346587 other upstream 641696 84181051 ~ 84182035 (-) True G305189
TU346768 other upstream 742128 84281483 ~ 84300976 (-) True si:dkey-230p4.1
TU346797 other upstream 765949 84305304 ~ 84308414 (-) True LOC110520676

Expression Profile