RNA id: TU346042


Basic Information

Item Value
RNA id TU346042
length 1516
lncRNA type sense_over
GC content 0.45
exon number 4
gene id LOC118964336
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 83646979 ~ 83770550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GacccagatctataacatcactaacagaaccatactatcctagcctggtccgagatctataacagaaccatactatcctagcctggtcccagatctataacagaaccatactatcctagcctggtcccagatctataacacaaccatactatcctagcctggtcccagatctataacagaaccagactatcctagcctggtcccagatttataacgaaaccatactatcttagcctggtcccagatctgtaacagaaccatactatcttagcctggtcccagatctacaacagaaccatactatcctagcctggtcccagatttataGCAGAACCATACATtccttgcctggtcccagatcttatTTCTTATTACGGGCTTCTTGTGTGTTCTGATTGGTTCACAGAGAAGCAGTGTCTGAAACCCCACGATCCACTGACCACTTGTGTGCAGGATCATAATCCCCTCCTTCTGTGTCTGCTGCTGGTGGGATGTGGGGTGCTACTCCTCTACAGCACCATCCTCACCATCACCGTCGTCCTCATCTGGAGGAAGCTGAAGAAGGAAGTGTCTGCTCAGACTACATACCTGAACATAAGGCTAGGAGAGAAGAGAGTTCCTCAGAGAGTCCAGTATCCAGTCACCGGAAGGTTCTGACGCTGACCTTCCTAAGGCTGTGCGTGCACGACttttgtgcactatgtagggaatagggtgccatctgggacttAGCCGATTGGCTCTTCAATCAATCTACTGACGCATTCAACGGCTCGAACGGCTTCACGATGCATTGGAACGGCTTCATACTGCATTGGAACGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTGGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTAGAATGGCTTCATACTGCATTGGAACGGCTTCAGAGTACATTATTCTTACAGACTTTAAGTAAAGTTTTACCAATCAGGATGTTTGTATTAAAGAGTGTTCACCGACACTGTATAATCTCTGTGTTGTTCCATAACAATGACTCCCTCCCTATTGGTTAATGCTTTGTACGAAGCTGTTTGTGTTTGAAAAGTAAAGGAAGGAGAAAGTTCATGTGAGTTTCACTTCGTACCCTCACGTTAGGCCCTCACCACACGTTCTTCCTGACATGCCAtttgggacccctCCGAGACATTTTCACACCTATTCTAGGAAATCAAAGATCATGTCTACTGCGTATCACTGAGCAGTTTCACACAACCTCACATACTGTAAGCACACATAAATATTGAGTGATGGATGGTAAATATGTGGATAATCCCTCCATTAAAATGGCACTCTGTTCCATAAATAGGGCCCTACTTTTATCCAGGGCCcataagggaatagggtcccatttcaGACAAACCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346053 lncRNA downstream 1441 83645109 ~ 83645538 (-) True G304763
TU346052 lncRNA downstream 2174 83644492 ~ 83644805 (-) True G304762
TU346040 lncRNA downstream 2532 83643371 ~ 83644447 (-) True G304754
TU345970 lncRNA downstream 13884 83632791 ~ 83633095 (-) True G304701
TU345969 lncRNA downstream 14300 83632358 ~ 83632679 (-) True G304700
TU346046 lncRNA upstream 4143 83671197 ~ 83688895 (-) False G304756
TU346069 lncRNA upstream 11282 83678336 ~ 83680406 (-) True G304776
TU346043 lncRNA upstream 14981 83682035 ~ 83717103 (-) False G304756
TU346045 lncRNA upstream 14981 83682035 ~ 83688895 (-) True G304756
TU346075 lncRNA upstream 28797 83695851 ~ 83731922 (-) True G304781
XM_036975349.1 mRNA downstream 3612 83639090 ~ 83643367 (-) True LOC110505466
XM_021598087.2 mRNA downstream 17698 83626569 ~ 83629281 (-) True LOC110520669
XM_036965263.1 mRNA downstream 34100 83546922 ~ 83612879 (-) True abcb6b
XM_036975346.1 mRNA downstream 107624 83483453 ~ 83539355 (-) False ttll4
XM_036975354.1 mRNA upstream 248818 83915872 ~ 83986617 (-) False abi2a
XM_036975355.1 mRNA upstream 248818 83915872 ~ 83986617 (-) False abi2a
XM_036975356.1 mRNA upstream 248818 83915872 ~ 83986617 (-) False abi2a
XM_036975357.1 mRNA upstream 248818 83915872 ~ 83986617 (-) False abi2a
XM_036975358.1 mRNA upstream 248818 83915872 ~ 83986617 (-) False abi2a
TU345446 other downstream 695623 82950069 ~ 82951356 (-) True G304264
TU345368 other downstream 795228 82831370 ~ 82851751 (-) False G304204
TU345254 other downstream 899241 82745244 ~ 82747738 (-) True LOC110505453
TU344968 other downstream 1332898 82297756 ~ 82314081 (-) True pard3bb
TU344667 other downstream 1623528 82022829 ~ 82023451 (-) True G303665
TU346425 other upstream 288690 83955744 ~ 83986517 (-) True abi2a
TU346535 other upstream 412967 84080021 ~ 84080484 (-) True LOC110504983
TU346587 other upstream 513997 84181051 ~ 84182035 (-) True G305189
TU346768 other upstream 614429 84281483 ~ 84300976 (-) True si:dkey-230p4.1
TU346797 other upstream 638250 84305304 ~ 84308414 (-) True LOC110520676

Expression Profile