RNA id: XM_036975354.1


Basic Information

Item Value
RNA id XM_036975354.1
length 4957
RNA type mRNA
GC content 0.53
exon number 9
gene id abi2a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 83915872 ~ 83986617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaagaagaagcagaagaagaagaagaagaagaagaagaagaagaggcgcTACTCAGGGTGCCCAAAACTTTTGGAGAAACGTCACAATCTGAAGTGAACTCGGTCAAGTCGTGAGATCTTGTGTCCAGGACCGCATCAGTGTAGAATAATGATGTAAAGATGGCGGAGCTACAAATGCTTTTGGAAGAAGAAATTCCAGCCGGTCGGAGAGCGTTACTGGATAGTTTTACGAATCTCGAAAGAGTTGCTGATTACTGCGAAAGCAACTATGTGCAGtcCCCAGATAAGCACCGAGCCCTGGAGGAGACAAAGGACTATACGTCCCAGTCCCTGGCCAGTGTAGCCTATCTGATCAACACCTTGGCTAATAATGTCCTCCAAATGCTTGATATCCAGGCATCGCAGCTCCAACGCATGGAGTCCTCCATCAACCATATCTCTCAGACGGTGGACATCCACAAGGAGAAGGTGGCAAGGAGAGAGATTGGAATCCTGACTACCAATAAGAACACATCTCGCACCCACAAAATCGTTGCTCCAGCCAATCCGGAGAGGCCAGTACGCTACATCCGTAAACCCATAGAGTACAATGTGCTGGATGACATCGGCCATGGAGTCAAGGTCAACAGCCAGAATATGAAGATGGGTGGAGGTCTCCCTCGAACCAACCCCCCAACCCAGAAACCGCCCAGCCCCCCCATGCCAGGGATGGGAACCATTGGGCGCCACTCCCCCTATCGGACGCTGGAGCCCGTTCGTCCTCCTGTGGTCCCTAACGACTATGTTCCCAGCCCCACACGCAGCATGGCCCAGCAGGAGATTCCTGTACTCACCACTACAGTTAACCAGCGGACACGCACCTACagCAGTCACCCCGACAGCAGTGGAGGCAGTCACCCCAACAGCAGTGGAGGCAGTCACCCCGACAGCAGTGGAGGCAGTCACCCCAACAGCAGTGGAGGCAGTCACCCCGACAGCAGTGGAGGCAGTCACCCCGACAGCAGTGGAGGCAGTCACCCCGACAGCAGTGGAGGCAGTCACCCCGACAGCAGTGGAGGCAGTCACCCCGACAGCAGTGGAGGCAGTCACCCCGACAGCAGTGGAGGCAGTCACCCCGACAGCAGTGGAGGCAGTCACCCCGACAGCAGTGGAGGCAGTCACCCCAACAGCAGTGGAGGGAGTCACCCCAACAGCAGTGGAGGCAGTCACCCCAGCAGCAGTGGAGGCAGTCACCCCAACAGCAGTGGAGGCAGTCACCCCAACAGCAGTGGAGAGAACAGTGGGAGTGGCTCTGTAGGAGTACCCATCGCTGTGCCAACAGCCTCTccaacagGGACCTCTTCTCCTGCTACCCAATCCCCACCGTCCGCACCTGACCGCGCCCCTAACACTGAGGCCCAATCGGCTGAGGCTGTAGCCGAGGCCCCTCTTCCCGCCCAATAtcctctctctgctgcagccaTCTCGGCAGAAGtcTCAGATGCACCTCCTCCtgcagaggaggaggagtcagCCGTGATTGAGTACAGTGACCCCTATGCCGAGGAGGACCCTCCCTGGGCCCCACACACCTACCTGGAGAAAGtTGTCGCCATCTACGACTACGCAGCAGACAAGGAGGACGAGCTGTCGTTCAACGAGGGCTGTATCATCTATGTGATCAAGAAGAACGACGATGGCTGGTACGAGGGGACTAAGACTGGTACCTCCGGGCTCTTCCCTGGTAACTACGTAGGATCCATCATGCATAACGCAGACTGAGGCCACCTTCCCTCCAAGCCCCAACCCCAGAGACACACTCTGAACCACATCCCAGAAGAGAACAGGGAGGAGATAGCTGTGTACCCAATGCATGGATAACATGTATCTATATACGGGTTGTACAGACTACCATGCAGACTAATTAGTGTACCTGTATACGGGGTGTACAGACTACCATGCAGACTAATTAGTGTACCTGTATGCGAGGTGTACAGACTACCATGCAGACTAATTAGTGCATTGGGGTGTAAAAAGGAGACATTGAAGATAATTGGTGGAGGAGACTTGGATTACTGACTCaggaaaagaggaagaggagtggagaatcAAGACTGGGCTTCTGCTCACTGTGGAGTGAGAGACACACTACCATACACCACCGAAACTCAAGTAATAACTACCAATAACAATCATTTCTAAGACATATGAAggataaactgttttaataaaaACAACTATTTTATTCCCTGTGTTTGGAAGGAAAGATGAGGAAAGATTATCCTGAGGAAAAGAAACGAGTGGTCACAGCGGAGCGCTCCGTGGACTGGACTGGTATGGATCGCTCCGTGGACTGGACTGGTATGGAGCGCTCCGTGGACTGGACTGGTATGGAGTGCTCCGTGGACTGGACTGGTATGGAGCGCTCCGTGGACTGGACTGGTATGGAGCGCTCCGTGGACTAGACTAGACTGGTATGGAGAGCTCCGTGGACTAGACTGGTATGGAGAGCTCCGTGGACTAGACTAGACTGGTATGGAGCGCTCCGTGGACTAGAATGGTATGGAGCGCTCCGTGGACTGGACTGGTATGGAGCGCTCCGTGGACTGGACTGGTATGGAGCGCTCCGTGGACTGGACTGGTATGGAGCGCTCCGTGGACTGGACTGGTATGGAGCGCTCCGTGGACTGGACTGGTATGGAGCGCTCCGTGGACTGGACTGGTATGGAGCGCTCTGTGGACTGGACGGGTATGGAGCGCTCCGTGGACTAGACGGGTATGGAGCGCTCCGTGGACTAGACTGGTATGGAGCGCTCCGTGGACTAGACTGGTATGGAGCGCTCCGTAGACTGGTATGGAGCGCTCCGTGGACTAGACTGGTATGGAGCGCTCCGTAGACTGGTATGGAGCGCTCCGTGGACTAGACTGGCATGGAGCGCTCCGTGGACTAGACTGGCATGGAGCGCTCCGTGGACTAGACTGGCATGGAGCGCTCCGTGGACTAGACTGGCATGGAGCGCTCCGTGGACTAGACTGGCATGGAGCGCTCCGTGGACTAGACTGGTATGGAGCGCTCCGTGGACCTTTATGGAGAGCTCCGTGGACTAGAATGGTATGTTGTGTGTAGGGTACGCCATAGACTGGTATGGAGCGCCCCGTGGACTAGACTGGTATGGAGCGCTCCGTGGACTGGTATGGAGAGCTCCATGGACTAGACTGGTATGTTGTGTATAGGGTACGCTGTGGACTGGTATGGAGCGCTCCGTGGACTGGTATGGAGCGCTCCGTGGAATAGACTGGTATGTTGTGTATAGGGTATGCCATAGACTGGTATGGAGCGCTCCGTGGACTAGACTGGTATGTTGTCTGTAGGGTACGCCATAGACTGGTATGGAGCGCTTCGTGGACTGGTATGGAGCGCTCCGTGAACTAGACTGGTATGTTGTGTGTAGGGTACGCCATAGACTGGTATGTTGTGTATAGGGTATGCCATAGACTGGTATGGAGCGCTCCGTGAACTAGACTGGTATGTTGTCTGTAGGGTACGCCATAGACTGGTATGGAGCGCTTCGTGGACTGGTATGGAGCGCTCCGTGAACTAGACTGGTATGTTGTGTATAGGGTACGCCATAGACTGGTATGGAGCGCTCCGTGGACTAGACTGGTATGGAGCGCTCCGTGGACTGGTATGGAGCGCTCCGTGGACTAGACTGGTATGTTGTGTATAGGGTATGCCATAGACTGGTATGGAGCGCTCCGTGGACTGGTATGGAGCGCTCCATGGACTGGACTGGTATGTTGTGTATAGGGTACGCCAAAGACTGGTATGGAGCGCTCCGTGGACTAGACTGGTATTGAGCGCTCCGTGGACTGGTATGGAGCACTCCGTGGACTGGACTGGTATGTTGTGTATAGGGTATGCCATAGACTGGTATGGAGCGCTCCGTGGACTAGACTGGTATGTAGCGCTTCGTGGATTGGTATGGAGCGCTCCGTGGACTAGACTGGTATGTAGCGCTCCGTGGACTAGACTGGTATGGAGAGCTCCGTGGACTAGACTGGTATGGAGAGCTCCGTGGACTGGTATGGAGCGCTCCGTGGACTAGACTGGTATGGAGAGCTCCGTGGACTGGTATGGAGCGCTCCGTGGACTGGACTGGTATGGAGAGCTCCGTGGACTAGACTGGTATGTTGTGTATAGGGTACGCCATAGACTGGTATGGAGCACTCTGTGGACTAGACTGGTATGGAGAGCTCCGTGGAATAGACTGGTATGTTTTGTATAGGGTACACCATAGACTGGTATGTTGTGTATAGGGTACACCATAGACTGGTATGTTGTGTATAGGGTACACCATAGACTGGTATGTTGTGTATAGGGTACACCATAGACTGGTATGTTGTGTATAGGGTACGCCATAGACTGCATGCTTCAACAGTTTGACATTTCACCCGTTTTCCTTTTGAGCTTTGCCTTTCCTTCAGATGTGGTTGTTTTATCATATTTAGGGACATCCTTAAATGGttgtttttcctgtgttttatattgtACAACAGACGATGACACTAACACCGTGTAAATGTGATCAGTggtgatagttgctggttgaaaatacaaggACCTTCTAATCAGTACATTTGCATGAGCAGAGTTTTGGCTTTCcgtggtgacatcaccatgctgtatagaccaataacaaagagttccAATCCTCTGCTAATAACAGCTAGTTCAAACATTCTTGAGTTttttgctaaaaagctatttgttcccattttaatggaaatctattacagtaaggtacttaactgTTACTcagaaaggatttgatattgaTGTAAAAACGTCTGCATTCAGCCTTTAACATGGACCTCCACTCTGAAGGTGTTGAATATTTTGTTGTGTGTGGACAGGGCCGGCCTTGCCTTTTTAGGGCCCTAacctaaaacatattttttttggggggggggacaccG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346260 lncRNA downstream 9044 83906629 ~ 83906828 (-) True G304924
TU346248 lncRNA downstream 17762 83893351 ~ 83898110 (-) True G304913
TU346227 lncRNA downstream 49827 83865088 ~ 83866045 (-) False G304896
TU346229 lncRNA downstream 49827 83865088 ~ 83866045 (-) False G304896
TU346228 lncRNA downstream 49827 83865750 ~ 83866045 (-) True G304896
TU346478 lncRNA upstream 21227 84007844 ~ 84008112 (-) True G305103
TU346479 lncRNA upstream 22251 84008868 ~ 84009068 (-) True G305104
TU346481 lncRNA upstream 25215 84011832 ~ 84012038 (-) True G305106
TU346482 lncRNA upstream 25557 84012174 ~ 84012418 (-) True G305107
TU346483 lncRNA upstream 26028 84012645 ~ 84013173 (-) True G305108
XM_036975350.1 mRNA downstream 145322 83647331 ~ 83770550 (-) False LOC118964336
XM_036975349.1 mRNA downstream 272505 83639090 ~ 83643367 (-) True LOC110505466
XM_021598087.2 mRNA downstream 286591 83626569 ~ 83629281 (-) True LOC110520669
XM_036965263.1 mRNA downstream 302993 83546922 ~ 83612879 (-) True abcb6b
XM_036975346.1 mRNA downstream 376517 83483453 ~ 83539355 (-) False ttll4
XM_036975362.1 mRNA upstream 87321 84073938 ~ 84220262 (-) False LOC110504983
XM_036965273.1 mRNA upstream 246110 84232727 ~ 84301357 (-) False si:dkey-230p4.1
XM_021598092.2 mRNA upstream 318686 84305303 ~ 84308440 (-) False LOC110520676
XM_036975363.1 mRNA upstream 326098 84312715 ~ 84624269 (-) False LOC110516739
XR_005051402.1 mRNA upstream 326098 84312715 ~ 84624269 (-) False LOC110516739
TU345446 other downstream 964516 82950069 ~ 82951356 (-) True G304264
TU345368 other downstream 1064121 82831370 ~ 82851751 (-) False G304204
TU345254 other downstream 1168134 82745244 ~ 82747738 (-) True LOC110505453
TU344968 other downstream 1601791 82297756 ~ 82314081 (-) True pard3bb
TU344667 other downstream 1892421 82022829 ~ 82023451 (-) True G303665
TU346535 other upstream 93404 84080021 ~ 84080484 (-) True LOC110504983
TU346587 other upstream 194434 84181051 ~ 84182035 (-) True G305189
TU346768 other upstream 294866 84281483 ~ 84300976 (-) True si:dkey-230p4.1
TU346797 other upstream 318687 84305304 ~ 84308414 (-) True LOC110520676
TU346793 other upstream 397658 84384275 ~ 84387134 (-) True LOC110516739

Expression Profile