RNA id: XM_036965273.1


Basic Information

Item Value
RNA id XM_036965273.1
length 7192
RNA type mRNA
GC content 0.54
exon number 25
gene id si:dkey-230p4.1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 84232727 ~ 84301357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcagttatgctgcactctatatctgcaggtatactgcactctgactgcaatctttttcAATAAGGAAAATTTCACCTGGGAACATTCTACAACTCTGTGGTAGAACCAAAAACAGTCAACTCTGTGGTAGAACCAAAAACAGTCAACTCTGTGGTAGAACCAAAAACAGTCAACTCTGTGGTAGAACCAAAAACAGTCAACTCTGTGGTAGAACTGTGGCACCTGCTGGACACGCTCACCATccactaaactagaggagactactCCTCCGGCCACACGGTGGCGCTGTCTGCGCATGAAGGGATTCTCTTTTTACATAGCAGCGTCTGCATGGTTCCTCTGTTTTTATGTTAAGAGGTAAAGTTTACTGTTTTGAATCCTGTTGTGAGGAAGTGTTTAGGATCATCAAAAGGAGTTGAATAAATTTCATGCATATGTTTCATTTGTTACAGAAAGAGTTTGTTTACATTCACAGTATGTTTCGAAGGATCTGCTTTTAAAGCTTCCTGAGTCTCTGGGGCGGGTTGACTGTCAAGGACCAGGATGGAGACGGCGCTGTTGGATggctggaaggaggagagggcgGAGCTGAGGGCGGAGGTGTCTCGCCTGCAGAATGAGCTGGCTGAGAGTCAtgctgagagagaggagctggagtCACGTGCCCAGGCCCTCACAGACAGGCTGTCCCAGTCCCTGGACCCGTCCCTGTGTGTGCCTCTGCGCCCGGACAGGGACTTGAGAAGGAAGATGCgagatggcagagagagggaggcccGGCAGGCTCTACTCATCCACAAACTGCAGAACAAGGTGGTTGAATACCGGGATCGCTGCCAGGGTTTGGAATACCAGGTGAAGACTGGAGAAAGAGAGCTCCTGAAACGTGAGAGGAGGATCAGGGATGAGCACAGTGACTCCTTAGAGAGCGCCCTCATCAGGCTGGAGGAAGAACAGCAGAGGAGTGTAGGGCTGGCAGAGCTGAACTCTCTCCTTCGTGGCCAGCTCAGCCAATCAGGCCAGGCAAATGAAGCACTGAGCGAGGACCTTTGCAAACTGACTACCGATTGGTCCAAAGCGGTGGAGGAGGCGGGACTGAGGGAGATGGAGtggcagaaagagaaagagcgACTGACCGGTCATGTCGACCGGGGGCAGAGTCGTCTGATGTCCATGTGGGGAGATGTGGTCACTCTGAGACGACACTGTCACACTGTGAAGACTGCCACTGACAGGGACCTCTGGGAGCTTAGAGCTGAGTTCTCtcgtctgtcttcctctctcctctcccactgtgGTTCAGTGGTGTCTCTATCTCTACGGCCCAGTGACCCTACAACCAGCCTCCATCCTGCTCCCCGCTCTGCCTCCGCCCCACCCCACTCCTCCACCCTaggcccacctcctctctcctccaccctaggCCCTCTCTCCTTGCAGGATCTGGACCACgaccagaaggagagagagcgggagagagaggagagcgagagggagctgACAGAGCTCAGAGCCCTCTATGAAGCTGAGACCCTGCATCTGAATAACAGGATCTCAGAGTTATCTCGTACCATTCAGGATCAAAAGATAGAacgacaggaggaggagaggaagatggagcGAGGGATGGCTtcggagaagaaagaggagagggaaaaggagagacagacaaacacagagagaactCTAGAGTGTGTCTATCAGGCCGTCCTAAAACTGTCCAAGGTGCTGAGCTCCCAGAGTCTGGATGGACAGAGTAGCAGTAGCCatactctgtctctgtccagtgaTTGGTTAGGACCAGACCTGTTGACTACAGGGCTAACCCAGGTGCTGGCTGTATTGGCCCAGGCTGAGACCAACCTGCTGTGGCGGCACCAGGAAGCACAGGAGGCTGCGGCTAGCCTGCGGAGGCTGGGTGAGGAGAGAGCAGGACTggaacagagagtcagacagCTGGAGACGGACACAGAGGAGAGGCAGAAACAGAGCCTGTATGAAGAACAGGAGCTCACTCACATTcaggacatgttactcagtgagagagagatggtgggctCCCTGAGGAGTCAgttggaggaagaagagagacagagtgaggagaggaggaaggagaacgATCGActgagactggagagagagagggaggaggagcagaggaacgAGCTGGAGAGCGATAGGCAGAGACGGTTGGAGGCGGACCTAGTAGAGAATGCCCATCTCAGTGAGCGTGAGGCTTGTATCCGCATGGAGCTGCATGTTCTACAGGGAGCGCTGCAGAGAGAACAGCTGGAcagggagagggcagaggaggaagCTGCTGATGCTAGGGATGCGCTAAGCAAGgCCCGTGAGTCAGTGTTAACCCTTTCGTCCGGTCAAACCCTTCTGAAGAGAGAAGTGTCAGAGCACCGTGACGCCCTAGAGAAGATGGCTGCCTTAAACGAAGCCTTAGCCAAGGACAAGAGAGAGCTCAACGCCCAGGCACTACAGCTTGAAATGGAGATGGCTGACCTCCAGGTCCAGCTACAGGGACTAGAGTCAAAGGTCGTGACCCTTCGTAGGGAGCTTCACACCCAGTCCAATGAGAGCACAGAGTTAAGGACTCGTAGAAGATCAGAGCTCAGCTCCCTGCAGCAgctcagggacagagagagagagctggagagagaggtggagaccctacgagaggagaaggagagagaggtggagaccctacgagaggagaaggagagagaggtggagaccctacgggaggagaaggagagagaggtggagaccctacgagaggagaaggagagagaggtggagaccctacgggaggagagaggaagggttggAAAACGGCTGGAAGAGCTGTCTGTGCAGCACGGTGCAGTGTGTGGGGAGTTGAGAGGTCTGCAGGCAGAGCTGTGCCAAGCGACAGAGCAGcagaggagggcagagagagagactgaggaactACTAAGAGAGAACCAGGATGTGGCGGGGACTGTCCTCTcactggagagagagcgagaccagcTGGGGCAGGACATTGAGGAACTCAGGATCCTGACGGTCTCCCAGCAGCACCAGTTAACCCAGACCCAGCAGCAGGTCTCAGGGCTGGAGGTAGAGAGTAGGCAGCTACAGATCCAGGTCACCACTCTGCTCCAGACCAAGGATGTGATGCAGGGGGAGGTCCAGTGtctgaggggagagatggagagagggaggagccagacagagaaggagaaacaggaggagcgagaggagagagagaggagccagagagagagggaggtctgGCAAGCTGACCTGGAAAGGCTGCAGTTACTGCTAGATCAGACAACAGAGAAAGGGACAAGacaagaggaggaatggagagaagagagggaaggatggcagagagagaggatggcgTTGAGctcagagctggggaacagagatggagaggtggtggCGATGAGGAACAGGATGGAGGGattggagaaggagaaggaggagatgtCGTGTCTGTTGGAGGAGAGAGACGCAGAGCTGGAGAGACTAACCGCAGAACACAAGAGCCACCAACACAGCGAGAGAAAactgaaggaggagggggagagatggagagagagagcagaggagggagagagatggagggagatagcagaggagagagcagaggagggagggagatggagggagaaagcagagagatggagggagaaagcagaAAAGAGAGCagaagaaggggagagatggagggagaaagcagaggagagagcagaagaggtagagagatggagggagaaagcagaggagagggagagagaaaatgcgAGACTGAATCAGAGGCTCACTGAAAAAGAGAAGAATAACAGTGAACAACTAAAGGCTGTGAAAAGAGAGAGTGACAAGATAGCAGAACAACTGAAAAAGGAGGAGGTAGATGGAAGGAAGAGATTAGAGAATATAGAGGAACTGAAAACTAGAATGATCTCActggaggaagaaagagacaatctggaggcagaactgaagAAAACTGAACTATTGGAGAACAAAATGTTTGCCgtggagagagagaactcacagctcagagagagggagagagaaagataccaAGAGAGtctgagaaagaggaggaaggagtcGGAGGGaagggagcgagaggagagactgagaggaaagctggagctgagagaaggagaggttgaGGTCTTGAGAGTGAAGTTGATTGTCTtagaagaagagagggatgaggggaagagagagcagcagacactagaggggaagatggagagacagatggcTCAgctgagggaaagagaagaggaggtaGATAAactgagggaggaggaagagaaggccgGGGCTAGGCTacagcagagagaggaagagttgaGAAATCTGAAAGACAGAATGCACCAGTCAGAGCTCTCAGAGAAACACGTCTCAGACCTTCTGATAGAGACGGAGTCTTTACTAGAGACCGAGAGGAGTCAGAGCAGAGACAGGGATAAAGCACTACACCTGGccaaggaggagagggagagggagagagaacaggcacAGGAAACAGAGCAGCACAACGTGAGACTGGAAGAGGAGGTGAAGAAATGGAAAGAAAGAGTGGAGGAACGGATAAAAGAAGTAGCAAGGCTCTCACAGctcctgaaggagagagaggaggaggactttAGGGTGAGAGCGGTAGAGAGcggtggagaaagacagagacagaaggaggaaCTGAaaaggagtgaggaggagagggagagacaggaggacgTATTGAGGAGGAACAAGGAGGAGAGGGAATGGTTGGGTGCCCAGCTGAAAGAGGagcagacggagggagagagactgaggtcCAGACTAGAGGAGGTGCAGAGAGGACAACGCCTCCTGCAGGAGGATAGAGGATGTCGTGTAGAGAGGCTGGGGGCTCAGGTTAAagccctggaggaggagagagaccacCTCTTAGCTGAGatcaggaagaaggagagagaggctgggatcCTGAAGGATGAGactcacagagagaggagagagaaggagaggactggCTCCTCACTgagaaggatggaggaggagttGAAGGAGAGCAGGGAGGCGCTGGCCCTCAGTCTGGCCACCCTGAAGGAGCAGGGAGCAGAGATGACCAGGAGCAGGGAGAGAAGCAGGAAGGAGGtgcaggagaaggagggggacaACCAGAAGATGAGAGAGGGGCTGAAGACAGCCATGCAGGAGATGGCTATCCTGAACCAGCTGCTGGAGGAGAGccacagggagggggagaggctaAGGAGCCTCCtgcaggagaggaaagaggagatggTGAAGAGCAGGGAGGAGAGCCTGCGTGCTGCccggggggaggtggaggagctgCGAGGGAGGACCAGGGCTGTGGAGCAAGAGAaaagggaggtggagagaaagctcagagacagagaggaggagatggaggaggcagtgagagagaatgacaggagacagaaggagatggaggaggtgttGGGAGAGAAGGAGGCTGAGCTGACCACCACCAGGGCTAGACTGGATGTCCTGGAGGAACAGAGGACAGAGCTCAGATGTCTGGCTGCTGAGAAGGCAGTTACACAGctcagagagagaatcagagtggtggagggagagatggagggagtgagagaagagaagaagagcgaGATTGAGAGGCTTCAGCGGAAGATGGAGAAGttgagacaggaagaggaggagaggagggagagtctgAAACTAAGGGAGCAGGAGAGCCTGAGGCGTGTAGAGTTAGTCACGGAcatgctgagagagagggagacggagctggagagggtgagagagaaatcttacagagaggagaaagataaactggaggagaggaagagagacacagaggaagtgAACCTGCAGAGTCTGGAGAAAGAAGAGACAGATGAACAGAGGAGACTGATAGAGCCTGGGGAACAAAGGGAGGCGACAGaccagaagagaggagaaagaagtcGGGAGGGTCCAGGAAGAGAGGTCTGGCTTCAGGACGAGGTAGATACTCTGAGGAAGAGAGTGTCCTCCCAGCTCCTGGAcacagaggaaagggagagactgttgagacagagagaagaggagggccAGGAGAGTCTTAGActgttgagacagagagagacagagctttacaccctgagagagagggtagaggaactCGGTAAGGACAGAGACCGTGTCACAGCTGCCCTGGAGAAGACTGAGGCTACCATGATTGGCTACCGGGACAGAGCCCACCAACAGGAGCAAAGCAGAGGGGCGGGATCTGAGAGGGCCGTGGCCCAGCTAGAGATGGACCCCCTGGTCCAGGAACGTCTGTCTGTCCTGCAGAGGGACGTGGCCCAGCTAGAGATAGACCCCCTGGTCCAGGAACGTCTGTCTGTCCTGCAGAGGGCCGTGGCCCAGCTAGAGATAGACCATAGACGGCTACAGAGGAGGAACACACAACTGGAACAACGCACTGACAGACTGAAGACTGAGAGGAAACACCTCAGAGAGATGCTGACACAGACGGAGAGAGGATCATCACGTGATGAGTTGTCCTCCAGCAGCCTCAGAGACAGAGCTCAGGAGTCCAGGGGCTTGGTTGGTCTGGAAACAGAGGAGTTGGGACTCCTTAGGACCAAGGTGAAGGAGCTAGAGGACCAGCGCGCCTCCCTGAAGCGATTTCTCCAACCGTTCAAAAGAAGAGAAGCCGTGTACACAGAGTGTATTTTGGGGAGGTGCACGGTCACTGGGCGGCCGGACTATTACAGTTCTGTAGCTTTGGACTCTGAATCACGCAGAGTACACTACCTACAGCTGACACTCGTCCTCGACCACCGGGAGAGGGTGGAGTTTATCCAACACTCCTCCAGGAACAACCAATGGCTGGTGTCTCTTCGCCAAGACTTGACTGATTCTCTGGTGTTGGTCTCGCAGCAACCAATCCCCTCTGTGCTGGAGTCAGAGACACACCGATTGGATAGGAGTgtcagggaggaggagatgagattGTCTCTCAGTCAGAGTTGAAGATGAAGCACAGAATGTTTGcctccgaaatggcaccctattgtcttccagggctctggtcaaaagtagtgcactatatctggaatagggtgccatttgggtctaaagtagtgcactatatctggaatagggtgccatttgggtctaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346760 lncRNA downstream 4235 84227641 ~ 84228492 (-) True G305323
TU346544 lncRNA downstream 144436 84087997 ~ 84088291 (-) True G305149
TU346524 lncRNA downstream 153343 84072966 ~ 84079384 (-) False LOC110504983
TU346532 lncRNA downstream 160208 84072271 ~ 84072519 (-) True G305140
TU346521 lncRNA downstream 162891 84069606 ~ 84069836 (-) True G305136
TU346792 lncRNA upstream 11399 84312756 ~ 84315138 (-) False LOC110516739
TU346802 lncRNA upstream 38465 84339822 ~ 84340038 (-) True G305359
TU346803 lncRNA upstream 47525 84348882 ~ 84349148 (-) True G305360
TU346806 lncRNA upstream 64858 84366215 ~ 84366492 (-) True G305363
TU346807 lncRNA upstream 66838 84368195 ~ 84368433 (-) True G305364
XM_036975362.1 mRNA downstream 12465 84073938 ~ 84220262 (-) False LOC110504983
XM_036975355.1 mRNA downstream 246110 83915872 ~ 83986617 (-) False abi2a
XM_021598092.2 mRNA upstream 3946 84305303 ~ 84308440 (-) False LOC110520676
XM_036975363.1 mRNA upstream 11358 84312715 ~ 84624269 (-) False LOC110516739
XR_005051402.1 mRNA upstream 11358 84312715 ~ 84624269 (-) False LOC110516739
XM_036975366.1 mRNA upstream 535518 84836875 ~ 84868307 (-) True xrcc5
XM_036975373.1 mRNA upstream 602981 84904338 ~ 84907876 (-) False LOC118964339
TU346587 other downstream 50692 84181051 ~ 84182035 (-) True G305189
TU346535 other downstream 152243 84080021 ~ 84080484 (-) True LOC110504983
TU346425 other downstream 246210 83955744 ~ 83986517 (-) True abi2a
TU345446 other downstream 1281371 82950069 ~ 82951356 (-) True G304264
TU345368 other downstream 1380976 82831370 ~ 82851751 (-) False G304204
TU346797 other upstream 3947 84305304 ~ 84308414 (-) True LOC110520676
TU346793 other upstream 82918 84384275 ~ 84387134 (-) True LOC110516739
TU347081 other upstream 428248 84729605 ~ 84730858 (-) False G305570
TU347082 other upstream 428248 84729605 ~ 84730858 (-) True G305570
TU347103 other upstream 456585 84757942 ~ 84758775 (-) True G305585

Expression Profile