RNA id: TU346797


Basic Information

Item Value
RNA id TU346797
length 1373
RNA type TUCP
GC content 0.40
exon number 4
gene id LOC110520676
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 84305303 ~ 84308440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGCTCCTGGTCGACAAACAGAAGACGGAGAGAGTTGAAAAATAAGCGCAAACATTTAGCAATCTGTAAATTAGTACATATCAGAGCATTAACTAGCTACACAATGTCTGAAGAAAAGCCAAAGGAAGGAGTGAAGACTGAAAACGACCACATCAACCTTAAGGTTGCAGGTCAAGATGGGTCAGTAGTCCAGTTCAAAATTAAAAGGCACACTCCGCTCAGCAAGCTGATGAAGGCGTACTGCGAAAGACAGGGTTTGTCAATTAGACAGATACGGTTTAGGTTTGACGGACAGCCAATCAACGAGACCGACACACCTGCACAGCTTGAGATGGAAGATGAGGATACTATTGATGTATTTCAACAACAGACTGGAGGAGGCTCCTTCCTCTCAGAGGCTTCTCTTAAAGGTGTATGGACCCTCTGAGGACAGAAACACAGTTGATGAGcagcaactttttttttttttattaaataatGGTCCTGCTTTTTTTTGTGTGATTGATCTGCTCGTAGCCATGGTCTTATTCTTTTCGAGCTGGATTTCAATgccaccaatccacaaatgtcttgtttatATTCATATTGAGGATGGACTATAAACTGCTTGTTTTGGAggagaatgtgtttgtttcacaCACGGGACAATGGGGATGTGGGGGGTTCAACTCATTCAGGCTTTGTCCCAACTGGCTCTCTATTCCTCTTATAGTGCTCTACACTAAAcaaagtagggtgccatttgggacacatattaAATCTACCATAGGTTGAGGGACTTAGTGTTGAACAGGTCTCATAATATgcaaaattatattttttatttttgtctgCTGTTTTTAAGTACATTTTGCAAAATATACAGTCCAAGTGATCAATTGTAATTTTAAACCTGTACAATGTGTTGAAGGAATATTGGTGAATGGGGTGCTCTACTGCTGGTGCCATTAGATTGAATTGCTTTGTGTCTCTGGAACAAAGGCTTTACTAAAGTGAACAGAAACGTCTATGATGGAAAAGAGTTTCAGGTCTATTTTCAACATCGCTTGAAAGAATGCAACTTACCTTTCACATGTCTGTTTGGTTTCTACCCCCTCACCCCTTCCACACAGATTTAAGGGAAGTAGTTGAGCTCCTGGTTTTAGCCCATCCCTCAATCAATATTTTGTGACAAAATAAAAGGGAATCCACCATGACttcaacaacctttgacctttttgTTTCTAATCAGACTTGATGAATCTTCCCACCTGCCTTCAGACTGTTGTGGTGGACTTGAATAGGCAGCATGGGTCCACTAGTCCTTATGTTGCTCTAATGATTTGTACATTGTCTTTTACTACTGTATACAATAAATATAGTTTGGTACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346760 lncRNA downstream 76812 84227641 ~ 84228492 (-) True G305323
TU346544 lncRNA downstream 217013 84087997 ~ 84088291 (-) True G305149
TU346524 lncRNA downstream 225920 84072966 ~ 84079384 (-) False LOC110504983
TU346532 lncRNA downstream 232785 84072271 ~ 84072519 (-) True G305140
TU346521 lncRNA downstream 235468 84069606 ~ 84069836 (-) True G305136
TU346792 lncRNA upstream 4342 84312756 ~ 84315138 (-) False LOC110516739
TU346802 lncRNA upstream 31408 84339822 ~ 84340038 (-) True G305359
TU346803 lncRNA upstream 40468 84348882 ~ 84349148 (-) True G305360
TU346806 lncRNA upstream 57801 84366215 ~ 84366492 (-) True G305363
TU346807 lncRNA upstream 59781 84368195 ~ 84368433 (-) True G305364
XM_036965273.1 mRNA downstream 3947 84232727 ~ 84301357 (-) False si:dkey-230p4.1
XM_036975362.1 mRNA downstream 85042 84073938 ~ 84220262 (-) False LOC110504983
XM_036975356.1 mRNA downstream 318687 83915872 ~ 83986617 (-) False abi2a
XM_036975363.1 mRNA upstream 4301 84312715 ~ 84624269 (-) False LOC110516739
XR_005051402.1 mRNA upstream 4301 84312715 ~ 84624269 (-) False LOC110516739
XM_036975366.1 mRNA upstream 528461 84836875 ~ 84868307 (-) True xrcc5
XM_036975373.1 mRNA upstream 595924 84904338 ~ 84907876 (-) False LOC118964339
XM_036975374.1 mRNA upstream 595924 84904338 ~ 84907876 (-) False LOC118964339
TU346768 other downstream 4328 84281483 ~ 84300976 (-) True si:dkey-230p4.1
TU346587 other downstream 123269 84181051 ~ 84182035 (-) True G305189
TU346535 other downstream 224820 84080021 ~ 84080484 (-) True LOC110504983
TU346425 other downstream 318787 83955744 ~ 83986517 (-) True abi2a
TU345446 other downstream 1353948 82950069 ~ 82951356 (-) True G304264
TU346793 other upstream 75861 84384275 ~ 84387134 (-) True LOC110516739
TU347081 other upstream 421191 84729605 ~ 84730858 (-) False G305570
TU347082 other upstream 421191 84729605 ~ 84730858 (-) True G305570
TU347103 other upstream 449528 84757942 ~ 84758775 (-) True G305585

Expression Profile