RNA id: XM_036975373.1


Basic Information

Item Value
RNA id XM_036975373.1
length 3482
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118964339
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 84904338 ~ 84907876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCTCTTGACTGGCCTCACAGGAAACAGGACCAATAGAAACAGAACCTCTTGACATCAGACTCTACTGACGTCAGACCAGTCATCTGACACGGCTCCCAATTTAGACACAGTGACAATAGGAAATCACTGTACCAACAGTAATACTGCTGTTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTGTTCCTACATACTGTTCTGTTCGTACATACTGTTCTGTTCCTACATACTGTTCTGCTCCAAGATACTGTTCTGTTCCTACATACTGTTCTGCTCCAAGATACTGTTATGTTCCTACATACTGTTCTGTTCCAACATGCTGTTCCTACATACTGTTCTGTTCCTATATGCTGTTCTGTTCCAATATGCTGTTCTGCTCCAACATGCTGTTCTGTTCCTACATGCTGTTCTGTTCCTACATACTGTAATGTTTCTACATGCTGTTCTGCTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTGCTCCAACATGCTGTTCGTACATGCTGTTCTGCTCCAACATGCTGTTCTATTCCAACATGCTGTTCGTACATGCTGTTCTGCTCCAACATGCTATTCTGCTCTAACATGCTGTTCTATTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTATTCCAACATGCTGTTCTATTCCAACATACTGTTCTCCTCCAACATGCTGTTCTGTTCCAACATGCTGTTCTGTTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTGCTCCAACATGCTGTTCTATTCCAACATGCTGTTCGTACATACTGTTCTCCTCCAACATGCTGTTCTGTTCCAACATGCTGTTCTGTTCCTACATACTATTCTTGCTTCAACATGCTGTTCCTGCATACTGTTCCTACATGCTGTTCTGTTCCTACATGCTGTTCTGTTCCTACATGCTGTTCTGTTCCTACATGCTGTTCTGTTCCTACATGCTGTTCTGCTCCTACATGCTGTTCTGCTCCTACATACTGTTCTGCTCCTACATACTGTTCCTACATGCTGTTCTGTTCCTACATACTGTTCTGTTCCTACATACTGTTCCTACATACTGTTCTGTTCCTACATACTGTTCTGTTCCTACATACTGTTCCTACATACTGTTCTGTTCCTACATGCTGTTCTGTTCCTACATACTGTTCTGCTCCTACATACTGTTCCTACATGCTGTTCTGTTCCTACATACTGTTCCTACATACTGTTCCTACATACTGTTCTGTTCCTACATGCTGTTCTGTTCCTACATACTGTTCTGTTCCTACATACTGTTCTGTTCCTACATACTGTTCTGCTCCTACATACTGTTCCTACATACTGTTCTGTTCCTACATGCTGTTCTGTTCCTACATGCTGTTCTGTTCCTACATGCTGTTCTGTTCCTACATGCTGTTCTGCTCCTACATGCTGTTCTGCTCCTACATACTGTTCTGCTCCTACATACTGTTCCTACATACTGTTCTGTTCCTACATGCTGTTCTGTTCCTACATACTGTTCTGCTCCTACATACTGTTCCTACATACTGTTCTGTTCCTACATACTGTTCCTACATGCTGTTCCAACATGCTGTTCTGTTCCTACATACTGTTCCTACATACTGTTCTGCTCCTACATACTGTTCCTACATGCTGTTCTGTTCCTACATACTGTTCCTACATGCTGTTCCAACATGCTGTTCTGTTCCTACATACTGTTCCTACATACTGTTCTGCTCCTACATACTGTTCCTACATAGACTGTACTATGGACCTCTTACATTTAGAATTTTAGCTTCCAGGCAACACTGTTTAAAGATGTTCCATGTTACCTTGTTATTCCATCAGAAGAATAGTGTCTCTATGTGAAGCTGTGAATGTGTTGAATTCTCCTTGTTCCCTTGTTATTCCATCAGAAGAATAGTGTCTATGTGAAGCTGTGAATGTGTTGAATTCTCCTGGCTTGTGGTGAGGACACAAGAGGTTCTAACGCTCTCTACCTGAACATAATATCTGCCTCCTTGTTCGTCCTCACTGGTGTCTCAGCATTGTGGAGTTGAGGCAGACCTGAACCCTGACCCTGCTAACTCTAACCTTACAGAGTGGAGCCAGGGTAGGAACCATAGACCTGAACTCTGACAGACAGAACTAGGACCAGCTAACCAGGTGGTGGAGTGGCAGGTGAATATGGAACACGCTGAGGTAGAACAGAATGGTAGTGAACAACAGACAGATCCCACAACACTGGGTCATTGCTACCATAGTGACAGGCggtataagtagtgcactatatagggaatagaggacCAGGGTTCAGCCCTGCCTCAACTCCACCATGCTGAGACACCAGTGAGGACGAACAAGGTGGTTTCGCTCCGACAAGGTTTcgcacagacagactcactacaATACAATCACAACACTGTATATCTGGATGTGGTGTGGCTGATGACTGTTGGCTGCATTGTGTTTTAGTTGGTTTGgagcttctctgtctgtctcagtagctTGGTTCTGATTCTCTCTGTAGCTTGGTTCTGATTCTGTGTGTAGCTTGGTTCTGATTCTGTGTGTAGcttggttctgattctgtttgtagcttggttctgattctgtgtgtctctgtagctTGGTTCTGATTCTGTCTGTAGCTTGGTTCTGATTCTTCATGTTATTGTGACCCTGTAGAGCTGCTCTATACTCTTAACAGCCACAAAGACACAAAAGGgttttgagtcccaaatggcaccctattccctctatagtgtactacttttgaccagggcccatagggaagaaGGACACTATGTAGGTAATATGGTGCACTTTGGGATGTTCCCACAGTCTTCCCTGTTGCGGTCAAACTCCTCGTCTCCTTTACCAGACGATTTCCTTATAGAAAATTATACATCTGTCATCAGTTGATGCTGTATTGGCCGGTTTTCAGTTGACTAGTCTTTTCACTTTTAAGGACAGAAGTGATATTTGTTCTGCTGTATTACTGATGTGTGATGTAAGGCCTGTTGATGGTGCTGCATTGACTGGACTGTACCATCATTACCAACCCCTCTAGTTCACAGCTCTTGATAAAGATCACCAATAATGACTGTAGAAAATAAATCCTTCAATACTCTTTTAGTTTAGTATTTGgttccatattcctagcacgcaataaCTACATCAAGCTGTCACTCTACAAcctgtttcagattattttttcCCAATAGTAATGAATTGGGAAATAATAtaatgtgtcattttggagtcacttttattgtaaataagaatataatatgtttctaaacacttctacattaatgtaaTGAATcgggaataatgatgagtgacaaagttacagagggtcaaagatcataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347337 lncRNA downstream 27305 84876705 ~ 84877033 (-) True G305744
TU347329 lncRNA downstream 49879 84854042 ~ 84854459 (-) True G305736
TU347327 lncRNA downstream 55653 84848164 ~ 84848685 (-) True G305734
TU347309 lncRNA downstream 69234 84834422 ~ 84835104 (-) True G305716
TU347111 lncRNA downstream 76734 84827339 ~ 84827604 (-) True G305593
TU347358 lncRNA upstream 10910 84918786 ~ 84919190 (-) True G305760
TU347347 lncRNA upstream 29185 84937061 ~ 84944444 (-) True G305754
TU347320 lncRNA upstream 52521 84960397 ~ 84964857 (-) True G305727
TU347379 lncRNA upstream 68395 84976271 ~ 84976799 (-) True G305779
TU347453 lncRNA upstream 171144 85079020 ~ 85079264 (-) True G305833
XM_036975366.1 mRNA downstream 36031 84836875 ~ 84868307 (-) True xrcc5
XM_036975363.1 mRNA downstream 280069 84312715 ~ 84624269 (-) False LOC110516739
XR_005051402.1 mRNA downstream 280069 84312715 ~ 84624269 (-) False LOC110516739
XM_021598092.2 mRNA downstream 595898 84305303 ~ 84308440 (-) False LOC110520676
XM_036965273.1 mRNA downstream 602981 84232727 ~ 84301357 (-) False si:dkey-230p4.1
XM_036975376.1 mRNA upstream 4676 84912552 ~ 85062818 (-) True LOC110520668
TU347103 other downstream 145563 84757942 ~ 84758775 (-) True G305585
TU347081 other downstream 173480 84729605 ~ 84730858 (-) False G305570
TU347082 other downstream 173480 84729605 ~ 84730858 (-) True G305570
TU346793 other downstream 517204 84384275 ~ 84387134 (-) True LOC110516739
TU346797 other downstream 595924 84305304 ~ 84308414 (-) True LOC110520676

Expression Profile