RNA id: XM_036975376.1


Basic Information

Item Value
RNA id XM_036975376.1
length 4186
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110520668
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 84912552 ~ 85062818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGATTGGAGAATAGGTTGGGGGAGTCAGATAACGTTCACACGACAGACACGCAATGATTCAATGAAAACTACAGACATTTCTAGCTTCGTTGGTCGAATTCATGTGATATCTGCTGTTAACGCATGACAAATTGGGTGACTGAGCGAGCGACAGATGAGTGACAGCACGGACACCCAGCTTTTTCACCTGGTGGACATCTGAACTCTGGAAGAGTGAGgtGTGTGAGGAAGATGCTGGGCTCAGAGcagggaggagtggtggaggaaTGGTTGTCAGAATTCAAGACTCTACCAGAAACCCACATCTCCACCTATGCAGGCAGCCTTCACCTGAAGAAGTCTCTGGTGCCAGCTCTCTACAGAGTCATCCAGGACAGCAGCAGTGAGCTCCTTGAGCCTGTCTGTCACCAGCTGTTTGAGATGTACCGGAGCTCTGAGGACCGCCTGAGACGCTTCACACTGCAGTTCCTTCCAGAGCTGGTCTGGGTGTACCTCCGCATCACCGCCAGCAGGGACCGCCAGAGCAACGGCTGCATAGAGGCCTTGCTGCTGGGCATATACAACCTGGAGATTGTGGACAAAGATGGGAACAGCAAGCTCCTGTCGTTCACCATCCCCTCCCTGTCCAAGCCCTCTGTGTATCACGAGCCCTCCAGTCTGGGCTCCATGGGTCTGACCGAGGGAGCTCTGAGTCATCATGACCTCATCAGGGTCGTCTACAGCGGGCTGCACCCTCAGAGAGAAACTTTCACTGCCCAGAACAGGTTTGAAGTGCTGTGTTTCCTCATGTTGTGCTACAACTCTGCTGTGGTCTACATGCCTCTCTCCTCCTACCAGTCTGTCTGCAGGATGAGCTCACGgttgtGTGTATGTGGTTTCCCGCAGCAGCAGCAGAAAGTGTGGAGAGAGCCGTGTAACCGTGTGGTTCTGGACCCAGAGTTCATGGTCCAGATGCTTACCGCTGTGTACCATGCCATATATAATGGCGAGTGGGAGATGGGGAAGGAAGCTCTGGAAGACATCCTCTACAGAGCTCAGCTGGAACTCTACTCTCAGCCCCTACTGCTGGGTAACGCTATGAAGAGTTCCCTGCCAGACAACGCTCCAGACGAGACGCGAGGCAGGAAGGTCCTTCAGGTGGAGGTCACTCCAACCGTCAGTCGCATCTCCCGCTCCGCCATCACTGCCGCATCCATCAGACGACACCGCTGGAAGAGGGAGGatgCTGATGGGATGAGTGTAGGTGAGGAGTCATTCAACCTCAACGACCCAGACGAGGGTTTCTCCTCAGGGGCTTCCAACAGCAGCCAGCCCAGCGCCACCAAGCCTGGGGGCCCCGGGCCCCGGGGGGGTAGTCAGAAGAGCAGCAGCGTCAAGAAGACTGTCACTGCCAGACtgtcccgagagagagagcgggagctgATGcatagggagaaggagatggagaagatGAAAGAccaggagagagcgagggagaaggagagagagctggagagatggagggagaaggagaggcagagagagagggtggcggAGAGTCGCAGGGAGCTGTTCTCCGCCGTGGTGGCCACTCCCACAGCAGCTCTGAGACGACGTCAGCAAACACAGACCCCTTCCCCTGCTCCTCCCCCCGTCACCATGGACACCATCGACATCGAGCTCAGCCCAATCAAGAAGCAGCAGTCCTTCCCTGGCCCCTGCCCCAGCCCCTCCCCCGGCACACTGGTCCGAACAGCCAGCTCCGCCTCCTCCAAGTCGTTGTATGAAGGTGTGAACATGAACCTGAACGGCAGCATTAGCAGCCTGGGGAGGGCTCTGGGAGGTTCTGGGGGGCTGGAGGGGGCTCTGGGAGGGCTGGGTGCCAGCGTGGGGGGAGGAGGGACCCACCGCTACTCCACCATCAGCCTGCAGGAGGAGGTGCTGGCCCGGCCTGAGGAGAACCAGGAGCTACTCTCCTCGGGAGCGCCCCTCACCAAGCAGTCCCGCTCCCCCAGCTTCAACATGCAGATCATATCACAGGTGTAGCCTAGCCTGGTGGGGTTGGCGGGGGGGCCTGGCAGGGCGGGAACTGGTGTGGAGGTAGACTCGcgcacacacatatagacacacaaattaatacatgcatatatatacaggtgtgtgtgtatatatatatatatatatatgtatatatatatatatatatatatatataacacacacacacacacacacacatctcacaccCAGCAGTCGGTCTCTGTTTCCTATTGTTCCGACTGGAACCCCACCCCGTTTGGCTGAAGCCCACCCCCTGTATGGCTGAAGCCCACCCCCTGTATGGCTGAAGCCCACCCCCTGTTTGGTTGAATGGCCACTAAGCCCAGGGTCTTCTACCCTGTAGAGAGCGAGACTAATGTTTTGACAAATAGCAGAGGGCTTTTGTCTTCGTGTTCAATTGTATACATAGTCAATCTATTTGAAACTTAACTGAGAATGGGAGTGTATAGTCAGTCATCTGACCAGACTTCCACTACCTAGAGTTAGGGTTCTGTCCTACTGCTATCCTGGGTCTGGGTCTCCCTGAAGGAACACACCATTCCACCTCTGACAGACAAAGCCACAAACACACCATTCCACCTCTGTGACAGGCAGAGACCCACAGAAACACACCATTCCACCTCTGTGACAGGCAGAGACCCACAGAAACACACCATTCCACCTCTGTGACAGGCAGAGACCCACAGAAACACACCATTCCACCTCTGTGATAGGCAGAGACCCACAGAAACACACCATTCCACCTCTGTGACAGGCAGAGACCCACAGAAACACACCATTCCACCTCTGTGACAGGCAGAGACCCACAGAAACACACCATTCCACCTCTGTGACAGGCAGAGACCCACAGAAACATACCATTAGACAGGAGTAGGACAACACCCCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGTAGGACAACACCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGTAGGACAACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGGCAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGGCAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGGCAACACCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGCAGGACGACACACCATTAGACAGCAGCAGGACGACACACCATTAGACAGCAGCAGGACGACACACCATTAGACAGCAGTAGGACGACACACCATTAGACAGCAGTAGGACAACACCATCACACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGGCAACACCATTAGACAGCAGTAGGGCAACACCATTAGACAGCAGTAGGGCAACACCATTAGACAGCAGTAGGACAACACCATTAGACAGCAGTAGGGCAACACACTTAGCAGCAGGGAAACACCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGCAGGACAACACACCATTAGACAGCAGCAGGACAACACACCATTAGACAGCAGCAGGACAACACACCATTAGACAGCAGCAGGACAACACACCATTAGACAGCAGCAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAGTAGGACAACACACCATTAGACAGCAACACACCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGCAGGACAACACCATTAGACAGCAGCA

Function

GO: NA

KEGG:

id description
K21844 FAM126; protein FAM126

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU347337 lncRNA downstream 35519 84876705 ~ 84877033 (-) True G305744
TU347329 lncRNA downstream 58093 84854042 ~ 84854459 (-) True G305736
TU347327 lncRNA downstream 63867 84848164 ~ 84848685 (-) True G305734
TU347309 lncRNA downstream 77448 84834422 ~ 84835104 (-) True G305716
TU347111 lncRNA downstream 84948 84827339 ~ 84827604 (-) True G305593
TU347453 lncRNA upstream 16202 85079020 ~ 85079264 (-) True G305833
TU347463 lncRNA upstream 20474 85083292 ~ 85085583 (-) False G305842
TU347464 lncRNA upstream 20474 85083292 ~ 85085583 (-) True G305842
TU347630 lncRNA upstream 166922 85229740 ~ 85230620 (-) True G305982
TU347639 lncRNA upstream 192700 85255518 ~ 85255873 (-) True G305991
XM_036975373.1 mRNA downstream 4676 84904338 ~ 84907876 (-) False LOC118964339
XM_036975374.1 mRNA downstream 4676 84904338 ~ 84907876 (-) False LOC118964339
XM_036975375.1 mRNA downstream 4676 84904338 ~ 84907876 (-) True LOC118964339
XM_036975366.1 mRNA downstream 44245 84836875 ~ 84868307 (-) True xrcc5
XM_036975363.1 mRNA downstream 288283 84312715 ~ 84624269 (-) False LOC110516739
TU347103 other downstream 153777 84757942 ~ 84758775 (-) True G305585
TU347081 other downstream 181694 84729605 ~ 84730858 (-) False G305570
TU347082 other downstream 181694 84729605 ~ 84730858 (-) True G305570
TU346793 other downstream 525418 84384275 ~ 84387134 (-) True LOC110516739
TU346797 other downstream 604138 84305304 ~ 84308414 (-) True LOC110520676

Expression Profile