RNA id: TU244070


Basic Information

Item Value
RNA id TU244070
length 1168
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G214598
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 111380 ~ 112658 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTAACTAGTGGTAAGTACTGAAGAATACCTGTACCAGGGTGAGTACTGAATAATACCTGTACCAGGGTAAGTACTGAAGAATACCTGTACCAGGGTGAGTACTGAAGAATACCTGTACCAGGGGTAAGTACTGAAGAATACCTATACCAGGGTGAGTACTGAATAATATCTAGTGGTAAGTACTGAAGAATACCTGTACCAGGGGTAGGTACTGACGAATACCTGTACCAGGGTAAGTACTGAAGAATACCTGTACCATGGGTAAGTACTGAAGAATACCTATACCAGGGTGAGTACTGAATAATATCTGTACCAGAGTGAGTACTGAATAATACCTGTACCAGGGGTAATTACTGAAGAATACCTGTTCCAACGGTAAGTACTGAAGAATACCTGTACCAGGGGTAAGTACTGAATAATACCTGTACCAGGGTGAGTACTGAAGAATACCTGTACCAGGGGTAAGTACTGAAGAATACATGTACAAGGGTGAGTCCTGAAGAGTATCTAGTGGTAAGTACTGAATAATACCTGTACCAGGGGTAAGTACTGAATAATACCTGTACCAGGGTTAAGTACTGAAGAGTATCTAGTGGTAAGTACTGAAGAAGACCTGTACCAGGGGTAAGTACTGAAGAGTATCTAGTGGTAAGTACTGAAGAATACCTGTACCAGGGGTAAGTACTGAATAATACCTGTACTAGGGTGAGTACTGAAGAATACCTGTACCAGGGGTAAGTACTGAAGAATACAAATGACTAAAAATGACTAAACAAGAATAGGACAAAAGCCTATCGTCCAGCTACGTATATAGAAAGTGAAGTCACAGCTATTTGTAGGAGAGCATGAATAATACTAGGTCAAGATGTTTAGTAGGAGAGCATGGATAATACTAGGTATAGATGTTTGTAGGAGAGCATGAATAATACTAGGTCTAGATGTTTAGTAGGAGAGCATGGATAATACTAGGTCTAGATGTTTAGCAGGAGAGCATGATTAATACTAGGTCTAGATGTTTAGTAGGAGAGCATGGATAATACTAGGTCTAGATGTTTAGCAGGAGAGCATGGATACAATCAGATGAACTTTTTAGAAATGACTGCactttgtacatagtccccccattttagagcaccaaaagtattgggacaaattcacttatattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU243951 lncRNA upstream 60416 46345 ~ 50964 (+) True G214540
TU243946 lncRNA upstream 69824 22224 ~ 41556 (+) False G214540
TU243938 lncRNA upstream 69824 35288 ~ 41556 (+) False G214540
TU243950 lncRNA upstream 70936 33215 ~ 40444 (+) False G214540
TU243968 lncRNA upstream 81956 22097 ~ 29424 (+) True G214541
TU244088 lncRNA downstream 13837 126495 ~ 127459 (+) True G214612
TU244104 lncRNA downstream 23939 136597 ~ 137096 (+) True G214626
TU244153 lncRNA downstream 62973 175631 ~ 175833 (+) True G214660
TU244163 lncRNA downstream 68375 181033 ~ 181337 (+) True G214665
TU244187 lncRNA downstream 85546 198204 ~ 198452 (+) True G214685
XM_036975417.1 mRNA downstream 82773 195431 ~ 196516 (+) True LOC118964343
XM_036975418.1 mRNA downstream 101082 213740 ~ 216403 (+) True LOC118964344
XM_036965307.1 mRNA downstream 827905 940563 ~ 944831 (+) True irx1a
XR_005039802.1 mRNA downstream 1012659 1125317 ~ 1128772 (+) False LOC118944464
XR_005040035.1 mRNA downstream 1194349 1307007 ~ 1309337 (+) True LOC118944732
TU244628 other downstream 403702 516360 ~ 518187 (+) True G215012
TU245231 other downstream 971784 1084442 ~ 1086530 (+) True G215455
TU245689 other downstream 1410611 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 1496980 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 1522940 1635598 ~ 1680107 (+) False LOC118944469

Expression Profile