RNA id: TCONS_00029062


Basic Information

Item Value
RNA id TCONS_00029062
length 2035
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_014710
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 19717971 ~ 19871211 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAACTTCACGATTTTATGAAGGACCCAGCCCCAGGAAAATATCCGGCGGACTGTTCGGATCATACAGCATACAATTCCACATAGAACCATAGGAGAAAACGAGATGGACAAGGAGAGAGCAAGAAAGCTGGGAAAGTGACAGTGAGAGGAAGAGCACACGAAGGAAAGTAagGATTGGCAATGGGCTCGCCGAAGCACGGAAAGGAAGTCGGTGTGGACAAGATTGGCTCAGTCCCCGGTTCTCTCAACTATGGCTCTGACCAGATGCGAAGGTATCGAACAGCATTCACGAGGGAGCAGATAGCTCGACTGGAAAAAGAGTTTTACCGGGAAAATTATGTGTCCAGGCCACGCAGATGCGAGTTGGCGGCTGCCTTAAATTTACCTGAAACCACAATAAAGGTTTGGTTTCAGAACCGTCGCATGAAGGACAAGAGACAGCGTCTGGCTATGACCTGGCCGCATCCTGCCGACCCCGCCTTTTACACCTATATGATGAGCCATGCTGCAGCAACGGGCAGTCTGCCCTATCCATTTCAATCTCATCTTCCCCTTCCTTACTATTCTCCACTAAGCAGTGTGACTGCAGGTTCAGCCACTGCCACTGCGGGTCCATTCTCAAATCCCCTGCGCTCGCTGGATAGTTTTCGGGTGCTTTCGCATCCATACCCGCGACCTGAACTGCTGTGCGCCTTCAGACACCCATCACTGTACCCCAGCCCGGGTCATGGGCTTGGTCCCGGTGGAAGTCCATGCTCCTGCCTTGCTTGCCACGCTTCCAGTCAAACAAACGGGCTCCAACATAGATCCAATAATGCAGAATTCTCGTGTTCGCCCACGACCAGGACTGAGGCCTTCCTCACTTTCTCGCCAGCAGTCATCAGCAAATCATCTTCGGTGTCTTTGGACCAGAGGGAGGAAGTGCCACTAACTAGATAAGCAAAGCGCAGTTGGCCACGGTTTTTTCTGGTATTATTCGGATCAGCTTTGGGCACTTTGGCAGTAATCTATAAGTCAACGCATGAACTACTCAAAGCAGCTTGCACAAAACTATGGCAATCAGCTTTAGTAAAGGTTTCCAAATTGTGGATGTTTTCCAATTTAGAAACTACATGTTGTGCAGACAGAGACCATTTTAACAGGACACGGAcctttaaataatctttaaaaacatttgataGTGCTCAATATCATATTAACTCTAATACATTTTGAGTCGGCTACACCCTATACACAAAACTGTAATGGGATACAAGAAAACGTCTGTAAAGATATTATTGGAGGAGAGTGCAGAAATCTGTCATAATTTATACACTTTCATACCCATACAAATTGACCCACATGCAGTTTCTTTCACATTAAACGATGTTTTTCATCTAGCTTTTTTAACAAGGGGATTTGTTAACCGAGCACGGTTGGCTCATTATTCCTCCTCCACGAACACCCGGTCCCGGCAGCACACCGAAATGTGCAGATGCGAGGGAAATTAAGGAGTGATGTATTCGGAAGGGAGAAATTTTGAATGTTGAATTAATGATAATGCTGCACGTTCAGAGACTTGTCTGCCAAACCGGTAACAAGGCGTCAGGGGATCGGATTAAGAAGCTCCATGCGAGGCTTGCTGGCTTGACGGGAGAACATGCGCTAGAGACCCATTGGACAATCACACGCGGCAAATTGGGGCAAGCCAGCCATGCCTGTCTTACCCCAATACCTTCAACTGAATAACCCCATCCCGAAACGTCTCTTTCTTGCCCTGATGTCGGCTTCACCATGTCTCTGAGACACACAATACAATAAATCCATGCataagtaaaataacaaattaatcaaCATAAGTGGCATTATTTATTGACTGTATTTTCTTACAATGGTGTATTTTAAATTCAACTTTGCATTAAGTTCTTTAATGTACAGTTTACATATTCATAATCTGGTAAATTAGGTTGATTTCTGGTTATGGAAAAAGCGCGAAAATGGGTCAGCAGTGttcttattaaaatgaatttcatAATAAATCAATTCAAAAAGTGA

Function

GO:

id name namespace
GO:0021521 ventral spinal cord interneuron specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0072498 embryonic skeletal joint development biological_process
GO:0033334 fin morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-364 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic skeletal joint development; fin morphogenesis; and ventral spinal cord interneuron specification. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; fin; gut; neural tube; and pronephros. Orthologous to human EVX1 (even-skipped homeobox 1).

Ensembl:

ensembl_id ENSDART00000170980

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030204 lncRNA downstream 205634 19510557 ~ 19512337 (-) True XLOC_014706
TCONS_00030203 lncRNA downstream 256674 19459051 ~ 19461297 (-) True XLOC_014704
TCONS_00030202 lncRNA downstream 438105 19275813 ~ 19279866 (-) False XLOC_014701
TCONS_00029048 lncRNA downstream 694611 19016195 ~ 19023360 (-) True XLOC_014700
TCONS_00029044 lncRNA downstream 764765 18942726 ~ 18953206 (-) True XLOC_014699
TCONS_00029073 lncRNA upstream 191034 20062245 ~ 20071609 (-) False XLOC_014714
TCONS_00030208 lncRNA upstream 266468 20137679 ~ 20143137 (-) True XLOC_014716
TCONS_00030209 lncRNA upstream 282459 20153670 ~ 20154323 (-) True XLOC_014718
TCONS_00029080 lncRNA upstream 287484 20158695 ~ 20160463 (-) False XLOC_014719
TCONS_00030210 lncRNA upstream 320673 20191884 ~ 20199159 (-) False XLOC_014720
TCONS_00029059 mRNA downstream 53228 19596605 ~ 19664743 (-) True XLOC_014708
TCONS_00029056 mRNA downstream 118599 19549062 ~ 19599372 (-) False XLOC_014707
TCONS_00029057 mRNA downstream 118599 19551211 ~ 19599372 (-) False XLOC_014707
TCONS_00029058 mRNA downstream 161193 19551538 ~ 19556778 (-) True XLOC_014707
TCONS_00029055 mRNA downstream 212804 19496479 ~ 19505167 (-) True XLOC_014705
TCONS_00029071 mRNA upstream 190681 20061892 ~ 20106486 (-) False XLOC_014714
TCONS_00029072 mRNA upstream 190797 20062008 ~ 20099394 (-) False XLOC_014714
TCONS_00029074 mRNA upstream 212507 20083718 ~ 20093341 (-) True XLOC_014714
TCONS_00029075 mRNA upstream 239488 20110699 ~ 20113696 (-) False XLOC_014715
TCONS_00029076 mRNA upstream 240535 20111746 ~ 20114149 (-) True XLOC_014715
TCONS_00029060 other downstream 7929 19709927 ~ 19710042 (-) True XLOC_014709
TCONS_00029050 other downstream 378684 19287163 ~ 19339287 (-) False XLOC_014701
TCONS_00029042 other downstream 856091 18861739 ~ 18861880 (-) True XLOC_014697
TCONS_00029041 other downstream 862495 18854057 ~ 18855476 (-) True XLOC_014696
TCONS_00029038 other downstream 876428 18841413 ~ 18841543 (-) True XLOC_014695
TCONS_00029077 other upstream 272639 20143850 ~ 20148449 (-) False XLOC_014717
TCONS_00029085 other upstream 380461 20251672 ~ 20270141 (-) False XLOC_014721
TCONS_00029097 other upstream 567931 20439142 ~ 20439260 (-) True XLOC_014725
TCONS_00029100 other upstream 1245200 21116411 ~ 21116543 (-) True XLOC_014728
TCONS_00029139 other upstream 2753058 22624269 ~ 22664107 (-) False XLOC_014739

Expression Profile

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