RNA id: TU244088



Basic Information


Item Value
RNA id TU244088
length 496
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G214612
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 126495 ~ 127459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtCCTGGCAAttcgaccgcagaaacctacccacctcctggttcactctctccacttgCCCATTACTCTCCGGGTGATACcctgaggtcaggctgaccgagacccccagacgttccataaaTGCCCTCCACACTGTGGAGGCGCAGGTTCCTCCCTTagcgcccgctcgatgtccgcgtccacctcccatactacTGGTGCCACCAGCTTAGCCGCCGGAATGATGGGAGTAggatcgatggaccggtcgtCAGTGtcatagaggcgggacagcgcgtcggccttagtgttgagggaacctggtcgATACGAGATTGTAAAACGAAATCTGGTGAaatacatggcccaccttgcctgacgaggattcagtctcctagctgatCGGATATACTCCAggttacggtggtcagtccagatgaggaaagggtacttagccccctcaagccagtgtctccacaccttcagggccttaACCATAGCCAACAACTCCCTGTCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU244070 lncRNA upstream 13837 111380 ~ 112658 (+) True G214598
TU243951 lncRNA upstream 75531 46345 ~ 50964 (+) True G214540
TU243946 lncRNA upstream 84939 22224 ~ 41556 (+) False G214540
TU243938 lncRNA upstream 84939 35288 ~ 41556 (+) False G214540
TU243950 lncRNA upstream 86051 33215 ~ 40444 (+) False G214540
TU244104 lncRNA downstream 9138 136597 ~ 137096 (+) True G214626
TU244153 lncRNA downstream 48172 175631 ~ 175833 (+) True G214660
TU244163 lncRNA downstream 53574 181033 ~ 181337 (+) True G214665
TU244187 lncRNA downstream 70745 198204 ~ 198452 (+) True G214685
TU244238 lncRNA downstream 119699 247158 ~ 251869 (+) True G214717
XM_036975417.1 mRNA downstream 67972 195431 ~ 196516 (+) True LOC118964343
XM_036975418.1 mRNA downstream 86281 213740 ~ 216403 (+) True LOC118964344
XM_036965307.1 mRNA downstream 813104 940563 ~ 944831 (+) True irx1a
XR_005039802.1 mRNA downstream 997858 1125317 ~ 1128772 (+) False LOC118944464
XR_005040035.1 mRNA downstream 1179548 1307007 ~ 1309337 (+) True LOC118944732
TU244628 other downstream 388901 516360 ~ 518187 (+) True G215012
TU245231 other downstream 956983 1084442 ~ 1086530 (+) True G215455
TU245689 other downstream 1395810 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 1482179 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 1508139 1635598 ~ 1680107 (+) False LOC118944469

Expression Profile