RNA id: TU244322


Basic Information

Item Value
RNA id TU244322
length 2138
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G214774
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 279159 ~ 281422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTACATACAGCTCTATCTTCTAATCTACATATTACCTACAGCTCTACCTTCTAATCTACAGGATACATAATACCTACAGCTCTACATTCTAATCTACAGGGTACATATTACCTACAGCTCTACCTTCTAATGTAGAGGGTAGATATTACCTACAGCTCTACCTTCTAATCTACAGGGTACGTAATACCTACAGCTCTACCTTCTAATCTACAGGGTATATATTACCTACAGCTCTACCTTCTAATCTACAGGGTACATCTTGCCTACAGCTCTACCTTCTAACGTAGAGGGTAGAAGTTACCTACAGCTCTACCTTCTAATCTACAGGGTACATATTACCTACAGCTCTACCTTCTAATGTAGAGGGTACATAATACCTACAGCTCTACCTTCTAATGTAGAGGGCACATATTACCTACAGCTCTACCTTCTAATCTACAGGGTACATATTGCCTACAGCTCTACCTTCTAATCTACATGGTACATATTACCTACAGCTCTACTTTCTAATTTGCAGGGTACATATTACCTACAGCTCTACCTTCTAATCTACATGGTACATATTACCTACTGCTCTACCTTCTAATGTAGAGGGTACATAATACCTACAGCTCTACCTTCTAATGTAGAGGGCACATATTACCTACAGCTCTACCTTCTAATCTACAGGGTACATAATACCTACAGCTCTACCTTCTAATCTACAGGGTACATAATACCTACAGCTCTACCTTCTAATGTAGAGGGCACATATTACCCACAGCTCTACCTTCTAATCTACAGGGTACATATTGCCTACAGCTCTACCTTCTAATCTACATGGTACATATTACCTACAGCTCTACTTTCTAATTTGCAGGGTACATATTACCTACAGCTCTACCTTCTAATCTACAGGGTACCTGGCTGGAAGCACCATGTCTTCATATTACCTACTGAGGGAATAACATGTGCTTCTACAGTAGGGCTACATGTTATTCCTGAGTGGTTCAGATGTTCAATAGAActgaggggtcactacagacaccctggttcagcggttcAATAGAActgaggggtcactacagacaccctggttcagcggttcAATAGAActgaggggtcactacagacaccctggttcagttTGTATGTAGGTGCATATTCATATTCTAGAGCTTTTAGGGGTTTCTAGTGAGGTTTTATCTCCTCAGACACAGCCCACCTCACAGTGAATATAGAAACAACTTCTCCGGTTTGACAGGGTGTCTTTATATTATAACAACAAAACCCCCCAGCCGATAATTAAATGAGTAAAAAGTGCAGTGGCCTGTGTCCTAAATGAATTGCATTCTATTAGATTACCCCGGTGTAGATAGCTCCAGACTTATTATTAACTATGTCCTACATGTTCCTACATTCAATTATCTTGAACATTATTATTGAAAGTAATCACTCTTCTCCAGAATGGTCCAAATATTCAGTCAAAGTGCATTTTGCTTTGTTAATTAAACTGGTTAAAGTGCAGTGGTCTGCATCCTATTGTGATCAAACCCATCATTTTGAATAGCTATACCACCTTTCTATTAATACAGGCTGAGCAGAGTTTTCAATTCATCCCCTTTAATGCGACATGGTCATTTCTGTTGCTAAAACAAAAGAGAAATGTCGTCTGGAAGAAGAATTGTCTATTACTGTTAATGAAACGAACCAAAGAGCAGCAGGCTGTATCCTCCAAGAACAACTCTGACTAATACATAATAATAGACCGTCTGGGCTGTGGAGTTGTGTGTGAAAACTATTATAACAGGTAATGGAGTTGGGAATGGGGACTTCATCAGACCTGTCGCAGGGAGAATGtcttgtatttttttattaaatgaCTAAGTGCAGCAGTCTGTATCCTATCTCTATTGTATCTATTGGACTGGATTATTTTACATTTTGATTGAAATGATGTCACAGGCAGATAAAAGTGGCTGGACTGTTGTAATGGAATCAGCCGGCGTTGTTTATTCTAGTGATCTACAGTGGTGATGTTCATGTCCCAACACCCAATGCATAAAACATCCACTCACTACTGATTAGATCTGTTTATAATGGCAAAACAAGAGTGTTGCTGTCTGGAGATGGGCAGGCATAAAGATAATACATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244291 lncRNA downstream 26882 247153 ~ 252277 (-) False LOC118944729
TU244294 lncRNA downstream 26882 247153 ~ 252277 (-) False LOC118944729
TU244295 lncRNA downstream 26882 247153 ~ 252277 (-) False LOC118944729
TU244303 lncRNA downstream 26882 247153 ~ 252277 (-) False LOC118944729
TU244304 lncRNA downstream 27778 247153 ~ 251381 (-) True LOC118944729
TU244326 lncRNA upstream 6635 288057 ~ 288680 (-) True G214778
TU244332 lncRNA upstream 13252 294674 ~ 301202 (-) True G214783
TU244434 lncRNA upstream 97281 378703 ~ 380379 (-) True G214876
TU244449 lncRNA upstream 118537 399959 ~ 400233 (-) True G214890
TU244450 lncRNA upstream 119976 401398 ~ 401650 (-) True G214891
XR_005040023.1 mRNA downstream 28611 249038 ~ 250548 (-) False LOC118944729
XR_005040024.1 mRNA downstream 28646 249038 ~ 250513 (-) False LOC118944729
XR_005040030.1 mRNA downstream 28646 249038 ~ 250513 (-) False LOC118944729
XM_036965278.1 mRNA downstream 123588 147740 ~ 155571 (-) True irx4a
XM_036975416.1 mRNA downstream 204606 63916 ~ 74553 (-) False LOC118964342
XM_036965290.1 mRNA upstream 229545 510967 ~ 515209 (-) True irx2a
XM_036975420.1 mRNA upstream 597578 879000 ~ 881031 (-) True LOC118964345
XM_036965348.1 mRNA upstream 1290255 1571677 ~ 1581702 (-) False LOC118936608
XR_005040037.1 mRNA upstream 1292942 1574364 ~ 1575575 (-) True LOC118944736
XM_036965320.1 mRNA upstream 1301694 1583116 ~ 1593615 (-) False LOC118944735
TU244156 other downstream 99568 177723 ~ 179591 (-) False G214663
TU244160 other downstream 99568 177723 ~ 179591 (-) True G214663
TU244157 other downstream 100772 177723 ~ 178387 (-) False G214663
TU244046 other downstream 204608 70094 ~ 74551 (-) True LOC118964342
TU244568 other upstream 199625 481047 ~ 481609 (-) True G214982
TU245090 other upstream 634537 915959 ~ 919673 (-) True G215354
TU245901 other upstream 1318804 1600226 ~ 1618140 (-) True G215950
TU245911 other upstream 1377658 1659080 ~ 1682022 (-) True G215956
TU245913 other upstream 1380267 1661689 ~ 1663067 (-) False LOC110519742

Expression Profile