RNA id: TU244353


Basic Information

Item Value
RNA id TU244353
length 260
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G214802
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 316444 ~ 316703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCACTCCTGGACAAGGGTGCCATCCGCAGGATCGAGACATCAGAACAACTAGGTAGGTTCTACTCCACTTATGTTGTGGATCCAAAAAGAGACGGAGGTTTAGACCTACTCTGGACCTCCGCAACCTCATTGggtacttgaaggtactgagGTTCCACATGCTGTTGCAGGCCGTGTCCAGGGATCAGTGGTTTGTGGTGCTGGACCTGAGGGATGAGTACTTCCATGTTCCTGTTCACCCAGCTCATTGGCAGTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244252 lncRNA upstream 34520 280314 ~ 281924 (+) True G214727
TU244238 lncRNA upstream 64575 247158 ~ 251869 (+) True G214717
TU244187 lncRNA upstream 117992 198204 ~ 198452 (+) True G214685
TU244163 lncRNA upstream 135107 181033 ~ 181337 (+) True G214665
TU244153 lncRNA upstream 140611 175631 ~ 175833 (+) True G214660
TU244360 lncRNA downstream 7833 324536 ~ 325192 (+) True G214809
TU244376 lncRNA downstream 24140 340843 ~ 341162 (+) True G214825
TU244413 lncRNA downstream 72123 388826 ~ 389123 (+) True G214859
TU244454 lncRNA downstream 85717 402420 ~ 406067 (+) False G214892
TU244455 lncRNA downstream 87122 403825 ~ 406067 (+) True G214892
XM_036975418.1 mRNA upstream 100041 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 119928 195431 ~ 196516 (+) True LOC118964343
XM_036965307.1 mRNA downstream 623860 940563 ~ 944831 (+) True irx1a
XR_005039802.1 mRNA downstream 808614 1125317 ~ 1128772 (+) False LOC118944464
XR_005040035.1 mRNA downstream 990304 1307007 ~ 1309337 (+) True LOC118944732
XR_005040036.1 mRNA downstream 1219176 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 1228554 1545257 ~ 1567659 (+) True LOC118964346
TU244628 other downstream 199657 516360 ~ 518187 (+) True G215012
TU245231 other downstream 767739 1084442 ~ 1086530 (+) True G215455
TU245689 other downstream 1206566 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 1292935 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 1318895 1635598 ~ 1680107 (+) False LOC118944469

Expression Profile