RNA id: TCONS_00030205


Basic Information

Item Value
RNA id TCONS_00030205
length 2265
lncRNA type read_through
GC content 0.38
exon number 2
gene id XLOC_014710
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 19717971 ~ 19871211 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctaatatttgtataaaaatagCACGATAGTATTTTCCAATATTTTAATACACTGTCAAAATTATTCTTATATAGCCTAATACATGACATTaagagcaaatcaaggcaaagccATTTCAATAAAGCATCATCAACAATAGCCCAGTGTTTGTTTTTCACACTGCTGGCTAATGAAacgtaatttaaaaaacaaataacgtTAATCAAATGTGTTATAATGTAAACGTGTAGCCTATAACATTTGTAGCCTAAATATGTGTATGGACTGCAAACATATAGTGAAAGGGTTGTATAAATTATTTGTTCCCGGTTACGGGAAACTGACTTTTGATTAGCCTGTCGATCAGGTGCAAGATGCGGATGTTTTCTAGGCGGCGCTCCTGAGTTAACTAAATATTGTTTACTGCAGGATAAAAACTAAGACAAGTTgttattcttcagtatatctctATTCTTCTTTAAGTCTAGATGTATGTTTGGCGTATGGACAATTTTTCCGGTAAATCTCCCGTTAGCCAGTTTGCTTAACTCTCATCCCATTATGTGGTACAGCACGTGTATTAATAAAGAACAACTGACAGCAGAATAGTAGCATAGCTAGATAGCTTTAGCGATTACCTTACTTTTCCTTTGCCACATTACACTGCGCACTGCCCGACCTACATGATATATTTTCCTGATGTGCTGATTTCCCAGTGTTTTTTCACTCATCTGGGGAATTTACAACACTAATACAATTTCTTTACTTTTCCATTGACAAATGTATTGCAATATGAAGTCTAAATAAACAGCCACAACAGCAGCCTTGTGTCTGCCTTTAGGTCTCATAGTCTATCTGGTCCTTTTGAGGTAGGCTACCATGATAACTTTATTGGATTCTAGCATATCACAACTCATCCCGTGATCCAAAAATCCTCAGTGTGGCTGACATCTGGCTTAGTGGACTTCCGCGGCTCAAAAAAAATGTGCACCTCTGTTTTGATGCACTGAGGAGATAAACAAAACGTATGCAACACGAACTGTTAAAAACCACATCGCCATATTGGTCACACGTATGGCTTGAGCAGCTACAATTGTCCGTTAAAGATAATAAACTTCACTTGCTGATGCTGTTCTAGTTCCCAGGTTCAGTCCTTTTAACAATTTGTGAATCCATGGACACTCGTTCTCTTCGGGGCTAAATGAACATGCCATTGACGGGGTAAATACAAGAAAGCTCATTGGTGGTCATTTGGTTGCTTTGACAAGCTGGGTGAGATGAAGTGCCCTCAGTCAATCCATTGCTGGCATTTTAACCAGTGAGAGCCTTGAAACAGAGGAGCCACACCCACCAACCCTTCGTCATCTGTCTGTAGAGTATCAGCAACTTTCAGAACCCAGAAAAGGTCAGACGTGGGACGGCTCTGTTCAACACGTCATGCTGAATTTAACCTAAAGCCCAGGGCTTAAACGTGCGGACTTTTCTCAGGGTTACCGCACAGACTTGGCTGTGCGGTCGACTTCAAGTTCGGGGAGGGGGACGGGCTACCGCCCACCGCGCAAGTCTGAAAAAGAGAATGAACAACAAACGCCACGCAAGCCATTCTATGCCCCGGATGGAGTTTCACAAAGTCGCTTCTACATCAGCGAAATTTACTAAGGCAGAAACCAATATAACATGACAAGTAGGAACTTTTGGGAGGGACTTCTCATCAGCATATTATAGTATGCTTAGCCTTTTATATATGTGCCGTTTTTGAATGGTCGACGTAAGCATCAAGCACcgtaagaaaaaaaattatttaaacattttaattaaaaagtaaccAAACCGTTTGTATATCGACCTACAAGGAATGAGAGATATGCATATCTTTCTTTAGTCTTAGCTATTCTTGAAAGCCCATTACTAAAACAAACTATTGCTGCTGtcattttaaaaagccattttctTTATTTAGAAAATGGATGCTCAGGCAGAGAGCTATTGGTCTGAAAGAGATAAATTTGATTACAAATCTTGTTAAGTATTTGCAAGTAGTTATGAGCTACATGTATTACATTCCACAGGAAAGTTGAAAAATGTCGAGTGTACAAATGTGCATCAACTGTGAAAATAtgtaattgtactttttttttttttaatatgtttttgtaaattttaaaagACAATAAACGATAGGATACCGATGAATACCAAGATAAAAATTATTCCCAAACGTTCGAACTTAAATTAAAATAGCAcgtagctatttttattttttaagcagaTACCTGGGAAGAGAAG

Function

GO:

id name namespace
GO:0021521 ventral spinal cord interneuron specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0072498 embryonic skeletal joint development biological_process
GO:0033334 fin morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029065 lncRNA downstream 13191 19719803 ~ 19721485 (-) False XLOC_014710
TCONS_00030204 lncRNA downstream 222339 19510557 ~ 19512337 (-) True XLOC_014706
TCONS_00030203 lncRNA downstream 273379 19459051 ~ 19461297 (-) True XLOC_014704
TCONS_00030202 lncRNA downstream 454810 19275813 ~ 19279866 (-) False XLOC_014701
TCONS_00029048 lncRNA downstream 711316 19016195 ~ 19023360 (-) True XLOC_014700
TCONS_00030207 lncRNA upstream 34415 19780147 ~ 19786187 (-) True XLOC_014713
TCONS_00029073 lncRNA upstream 316513 20062245 ~ 20071609 (-) False XLOC_014714
TCONS_00030208 lncRNA upstream 391947 20137679 ~ 20143137 (-) True XLOC_014716
TCONS_00030209 lncRNA upstream 407938 20153670 ~ 20154323 (-) True XLOC_014718
TCONS_00029080 lncRNA upstream 412963 20158695 ~ 20160463 (-) False XLOC_014719
TCONS_00029063 mRNA downstream 13120 19717974 ~ 19721556 (-) False XLOC_014710
TCONS_00029061 mRNA downstream 13932 19717971 ~ 19720744 (-) False XLOC_014710
TCONS_00029059 mRNA downstream 69933 19596605 ~ 19664743 (-) True XLOC_014708
TCONS_00029057 mRNA downstream 135304 19551211 ~ 19599372 (-) False XLOC_014707
TCONS_00029071 mRNA upstream 316160 20061892 ~ 20106486 (-) False XLOC_014714
TCONS_00029072 mRNA upstream 316276 20062008 ~ 20099394 (-) False XLOC_014714
TCONS_00029074 mRNA upstream 337986 20083718 ~ 20093341 (-) True XLOC_014714
TCONS_00029075 mRNA upstream 364967 20110699 ~ 20113696 (-) False XLOC_014715
TCONS_00029076 mRNA upstream 366014 20111746 ~ 20114149 (-) True XLOC_014715
TCONS_00029066 other downstream 5921 19728690 ~ 19728755 (-) True XLOC_014711
TCONS_00029060 other downstream 24634 19709927 ~ 19710042 (-) True XLOC_014709
TCONS_00029050 other downstream 395389 19287163 ~ 19339287 (-) False XLOC_014701
TCONS_00029042 other downstream 872796 18861739 ~ 18861880 (-) True XLOC_014697
TCONS_00029041 other downstream 879200 18854057 ~ 18855476 (-) True XLOC_014696
TCONS_00029070 other upstream 76430 19822162 ~ 19861512 (-) True XLOC_014710
TCONS_00029077 other upstream 398118 20143850 ~ 20148449 (-) False XLOC_014717
TCONS_00029085 other upstream 505940 20251672 ~ 20270141 (-) False XLOC_014721
TCONS_00029097 other upstream 693410 20439142 ~ 20439260 (-) True XLOC_014725
TCONS_00029100 other upstream 1370679 21116411 ~ 21116543 (-) True XLOC_014728

Expression Profile

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