RNA id: TU244572


Basic Information

Item Value
RNA id TU244572
length 331
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G214985
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 485407 ~ 485737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcctacataaagctgttagggcctacataaagctgctagggcctacataaagctgtcagggcctacataaagctgttagggcctacataaagctgttagggcctacataaagctgttagggcctacataaaactgttagggcctacataaagctgctagggcctacataaagcggTTAGagactacataaagctgttagagcctacataaagctgttagggcctacataaagctgttagggcctacataaagctgttagagcctacataaagctgttagggcctacataaagctgctagggcctacataaagctgttagggcctacataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244567 lncRNA upstream 3999 481188 ~ 481408 (+) True G214981
TU244566 lncRNA upstream 4876 480329 ~ 480531 (+) True G214980
TU244550 lncRNA upstream 13946 470986 ~ 471461 (+) True G214966
TU244546 lncRNA upstream 16881 468013 ~ 468526 (+) True G214962
TU244542 lncRNA upstream 18475 465394 ~ 466932 (+) True G214959
TU244573 lncRNA downstream 1129 486866 ~ 487250 (+) True G214986
TU244574 lncRNA downstream 1734 487471 ~ 488119 (+) True G214987
TU244575 lncRNA downstream 2945 488682 ~ 489186 (+) True G214988
TU244577 lncRNA downstream 6291 492028 ~ 495223 (+) True G214990
TU244592 lncRNA downstream 12123 497860 ~ 501722 (+) False G214995
XM_036975418.1 mRNA upstream 269004 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 288891 195431 ~ 196516 (+) True LOC118964343
XM_036965307.1 mRNA downstream 454826 940563 ~ 944831 (+) True irx1a
XR_005039802.1 mRNA downstream 639580 1125317 ~ 1128772 (+) False LOC118944464
XR_005040035.1 mRNA downstream 821270 1307007 ~ 1309337 (+) True LOC118944732
XR_005040036.1 mRNA downstream 1050142 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 1059520 1545257 ~ 1567659 (+) True LOC118964346
TU244628 other downstream 30623 516360 ~ 518187 (+) True G215012
TU245231 other downstream 598705 1084442 ~ 1086530 (+) True G215455
TU245689 other downstream 1037532 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 1123901 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 1149861 1635598 ~ 1680107 (+) False LOC118944469

Expression Profile