RNA id: TU244577


Basic Information

Item Value
RNA id TU244577
length 1737
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G214990
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 492028 ~ 495223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acataaagctgttagggcctacatgaaGCTGTTaaagcctacataaagctgttagagcctacataaagctgttagagcctacataaagctgttagggcctacataaacgtgttagagcctacataaagctacttgggcctacataaagctgttagggcctacataaagctgttagggcctacataaaactgtcagggcctacataaagctgctagggcctacataaagcggttagagcctacataaagctgttagagcctacataaagctgttagggcctacataaagctgttagggcctacataaagctgttagagcctacataaagctgttagggcctacataaagctgctagggcctacataaagctgttagggcctacataaaaaTGTCAgggtctacataaagctgttagggcctacataaagctgttagggcctacataacgctgttagggcctacataaagctgttagagcctacataaagctgttggGGCCTACATGAAGCtgctagggcctacataaagctgttagggcctacataaagctgtcagggcctacataaagctgttagggcctacataaagctgttagggcctacataacgctgttagggcctacataaagctgtcagggcctacataaagctgttagggacTACATAACGCTGTTAGGGCCAacataaagctgttagagcctacataaagctgttagagcctacaGAAAGCTGTTAGAGCCAagataaagctgttagggcctttataaagctgttagggcctacataaagctgttagggcctgcATAAAGCTGTTACAGCCTACATAAAACTtgtagggcctacataaagctgttagggcctacataaagctgttagagcctacataaagctgttagagcctacataaagctgttagagcctacataaagctgttagagcctacataaagctgttagggcctacataaagctgttagagcctacataaagctgttagagcctacataaagctgttagagcatacataaagctgtcagggcctacataaagctgttagggcctacataaagctgtcagggcctacataaagctgctagggcctacataaagcggttagagcctacataaagctgttagggcctacataacaCCTTTAGGGCCAacataaagctgttagagcctacataaaatgtttagggcctacataaagctgttagggcctacataaagctgttagagcctacataaagctatTAGGGCCTACATATAGCTGTTAGGGTCTACATGaagctgttagagcctacataaagctgttagagcctacataaagctgttagggcctacataaagctgttagggtcTACATGaagctgttagagcctacataaagctgttagagccTTCATGAAGCTGTTAGAGTCTACTTGAaactgttagagcctacataaagctgttagggtcTACATGaagctgttagagcctacatgAAGCTGTTAGGACCTACATCaagctgttagagcctacataatgcagttagggcctacataaagctgttagggcctccGTAAAGCTGTCAGGGCCGGCATAAAGGTGTTAGAGCCTACATGAAGCTGTTAGAGCCTGCATAAAGCTattagagcctacataaagctgttagggcctacatagaGCTGTTAGGTCCTACATAAAGTTGCTAGGGCCttcataaagctgttagggcctacataaagctgttaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244575 lncRNA upstream 2842 488682 ~ 489186 (+) True G214988
TU244574 lncRNA upstream 3909 487471 ~ 488119 (+) True G214987
TU244573 lncRNA upstream 4778 486866 ~ 487250 (+) True G214986
TU244572 lncRNA upstream 6291 485407 ~ 485737 (+) True G214985
TU244567 lncRNA upstream 10620 481188 ~ 481408 (+) True G214981
TU244592 lncRNA downstream 2637 497860 ~ 501722 (+) False G214995
TU244593 lncRNA downstream 3238 498461 ~ 501722 (+) False G214995
TU244596 lncRNA downstream 4648 499871 ~ 501722 (+) True G214995
TU244620 lncRNA downstream 14993 510216 ~ 510481 (+) True G215009
TU244668 lncRNA downstream 53360 548583 ~ 549057 (+) True G215045
XM_036975418.1 mRNA upstream 275625 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 295512 195431 ~ 196516 (+) True LOC118964343
XM_036965307.1 mRNA downstream 445340 940563 ~ 944831 (+) True irx1a
XR_005039802.1 mRNA downstream 630094 1125317 ~ 1128772 (+) False LOC118944464
XR_005040035.1 mRNA downstream 811784 1307007 ~ 1309337 (+) True LOC118944732
XR_005040036.1 mRNA downstream 1040656 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 1050034 1545257 ~ 1567659 (+) True LOC118964346
TU244628 other downstream 21137 516360 ~ 518187 (+) True G215012
TU245231 other downstream 589219 1084442 ~ 1086530 (+) True G215455
TU245689 other downstream 1028046 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 1114415 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 1140375 1635598 ~ 1680107 (+) False LOC118944469

Expression Profile