RNA id: TU244668


Basic Information

Item Value
RNA id TU244668
length 475
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G215045
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 548583 ~ 549057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagagtaatactgttttatcaacagtaacagagtaatactgttttatcaacagtaacagaagtggaagagtaatactgttttatcaacagtaacagaagtggaagagtaatactgttttatcaacagtaacagaagtgaaagagtaatactgttttatcaacagtaacagagtaatactgttttatcaacagtaacagaagtggaagagtaatactgttttatcaacagtaacagaagtggaagagtaatactgttttatcaacagtaacagagtaatactgttttatcaacagtaacagagtaatactgttttatcaacagtaacagagtaatactgttttatcaacagtaacaaagtaatactgttttatcaatagtaacagagtaatactgttttatcaacagtaacagaagtggaagagtaatactgttttatcaacagtaacagaagtggaagagtaatactgttttatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244620 lncRNA upstream 38102 510216 ~ 510481 (+) True G215009
TU244592 lncRNA upstream 46861 497860 ~ 501722 (+) False G214995
TU244593 lncRNA upstream 46861 498461 ~ 501722 (+) False G214995
TU244596 lncRNA upstream 46861 499871 ~ 501722 (+) True G214995
TU244577 lncRNA upstream 53360 492028 ~ 495223 (+) True G214990
TU244669 lncRNA downstream 2662 551719 ~ 551920 (+) True G215046
TU244670 lncRNA downstream 3780 552837 ~ 553218 (+) True G215047
TU244710 lncRNA downstream 36473 585530 ~ 586141 (+) True G215073
TU244728 lncRNA downstream 54365 603422 ~ 603763 (+) True G215084
TU244740 lncRNA downstream 67173 616230 ~ 616545 (+) True G215093
XM_036975418.1 mRNA upstream 332180 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 352067 195431 ~ 196516 (+) True LOC118964343
XM_036965307.1 mRNA downstream 391506 940563 ~ 944831 (+) True irx1a
XR_005039802.1 mRNA downstream 576260 1125317 ~ 1128772 (+) False LOC118944464
XR_005040035.1 mRNA downstream 757950 1307007 ~ 1309337 (+) True LOC118944732
XR_005040036.1 mRNA downstream 986822 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 996200 1545257 ~ 1567659 (+) True LOC118964346
TU244628 other upstream 30396 516360 ~ 518187 (+) True G215012
TU245231 other downstream 535385 1084442 ~ 1086530 (+) True G215455
TU245689 other downstream 974212 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 1060581 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 1086541 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 1092594 1641651 ~ 1680107 (+) True LOC118944469

Expression Profile