RNA id: TU244740


Basic Information

Item Value
RNA id TU244740
length 316
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G215093
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 616230 ~ 616545 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagtgtctcctgacccctcctgtctcagcctccagtatttatgctgcagtagtttatgtgtcggggggctaaggtcagtttgttatatctggagtacttctcctgtcttatccggtgtcctgtgtgaatttaagtatgctctctctaattctatctttctctctttttttctctctctcggagaacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtctccagtccacctggtcgtgctgctgctccagttttaactgttctgcctgcagctatggaaccctgacctgttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244728 lncRNA upstream 12467 603422 ~ 603763 (+) True G215084
TU244710 lncRNA upstream 30089 585530 ~ 586141 (+) True G215073
TU244670 lncRNA upstream 63012 552837 ~ 553218 (+) True G215047
TU244669 lncRNA upstream 64310 551719 ~ 551920 (+) True G215046
TU244668 lncRNA upstream 67173 548583 ~ 549057 (+) True G215045
TU244748 lncRNA downstream 5959 622504 ~ 623226 (+) True G215100
TU244772 lncRNA downstream 36869 653414 ~ 653838 (+) True G215118
TU244855 lncRNA downstream 99062 715607 ~ 717602 (+) True G215179
TU244862 lncRNA downstream 102928 719473 ~ 723944 (+) False G215182
TU244863 lncRNA downstream 106622 723167 ~ 723944 (+) True G215182
XM_036975418.1 mRNA upstream 399827 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 419714 195431 ~ 196516 (+) True LOC118964343
XM_036965307.1 mRNA downstream 324018 940563 ~ 944831 (+) True irx1a
XR_005039802.1 mRNA downstream 508772 1125317 ~ 1128772 (+) False LOC118944464
XR_005040035.1 mRNA downstream 690462 1307007 ~ 1309337 (+) True LOC118944732
XR_005040036.1 mRNA downstream 919334 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 928712 1545257 ~ 1567659 (+) True LOC118964346
TU244628 other upstream 98043 516360 ~ 518187 (+) True G215012
TU245231 other downstream 467897 1084442 ~ 1086530 (+) True G215455
TU245689 other downstream 906724 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 993093 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 1019053 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 1025106 1641651 ~ 1680107 (+) True LOC118944469

Expression Profile