RNA id: TU244938


Basic Information

Item Value
RNA id TU244938
length 428
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G215246
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 786231 ~ 786658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatggggttaagatgggttagacattctgatggggttaagatgggttagacattctgatggggttaagatgggttagacattctgatggggttaaaatgggttagacattctgatggggttaagatgggttagacattctgatggggttaagatgggttagacagtctgatggggttaagatgggttagacattctgatggggttaagatgggttagacagtctgatggggttaagatgggttagacattctgatggggttaagatgggttagacattctgatggggttaagatgggttagacattctgatggggttaagatgggttagacattctgatggggttaaaatgggttagacattctgatggggttaaaatgggttagacagtctgatggggttaagatgggttagacattctgatggggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244933 lncRNA downstream 3193 782412 ~ 783038 (-) True G215241
TU244929 lncRNA downstream 5239 780774 ~ 780992 (-) True G215237
TU244927 lncRNA downstream 8625 777330 ~ 777606 (-) True G215235
TU244906 lncRNA downstream 36291 749725 ~ 749940 (-) True G215217
TU244859 lncRNA downstream 69343 713933 ~ 716888 (-) True G215180
TU244956 lncRNA upstream 41487 828145 ~ 828548 (-) True G215263
TU244959 lncRNA upstream 42596 829254 ~ 829968 (-) True G215265
TU245009 lncRNA upstream 74654 861312 ~ 861628 (-) True G215297
TU245038 lncRNA upstream 100739 887397 ~ 889458 (-) True G215316
TU245108 lncRNA upstream 149509 936167 ~ 936552 (-) True G215364
XM_036965290.1 mRNA downstream 271022 510967 ~ 515209 (-) True irx2a
XR_005040023.1 mRNA downstream 535683 249038 ~ 250548 (-) False LOC118944729
XR_005040024.1 mRNA downstream 535718 249038 ~ 250513 (-) False LOC118944729
XR_005040030.1 mRNA downstream 535718 249038 ~ 250513 (-) False LOC118944729
XM_036965278.1 mRNA downstream 630660 147740 ~ 155571 (-) True irx4a
XM_036975420.1 mRNA upstream 92342 879000 ~ 881031 (-) True LOC118964345
XM_036965348.1 mRNA upstream 785019 1571677 ~ 1581702 (-) False LOC118936608
XR_005040037.1 mRNA upstream 787706 1574364 ~ 1575575 (-) True LOC118944736
XM_036965320.1 mRNA upstream 796458 1583116 ~ 1593615 (-) False LOC118944735
XM_036965332.1 mRNA upstream 796458 1583116 ~ 1593615 (-) True LOC118944735
TU244568 other downstream 304622 481047 ~ 481609 (-) True G214982
TU244156 other downstream 606640 177723 ~ 179591 (-) False G214663
TU244160 other downstream 606640 177723 ~ 179591 (-) True G214663
TU244157 other downstream 607844 177723 ~ 178387 (-) False G214663
TU244046 other downstream 711680 70094 ~ 74551 (-) True LOC118964342
TU245090 other upstream 129301 915959 ~ 919673 (-) True G215354
TU245901 other upstream 813568 1600226 ~ 1618140 (-) True G215950
TU245911 other upstream 872422 1659080 ~ 1682022 (-) True G215956
TU245913 other upstream 875031 1661689 ~ 1663067 (-) False LOC110519742
TU245915 other upstream 1140086 1926744 ~ 1952588 (-) True LOC110516567

Expression Profile