RNA id: TU245220


Basic Information

Item Value
RNA id TU245220
length 484
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G215448
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1064180 ~ 1066123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTCAAATTTACATTTAGTTTGAAACTACTGATACTACTTACGTTGTAGTTAGTGCTGCTAACGgacgttgtagttaacactgataaaggacgttgtagttaacactgataaaggacattgtagttaacactgataaaggacgttgtagttaacactgataaaggacgttgtagttaacactgataaaggacgttgtagttaacactgataaaggatgttgtagttaacactgataaaggacgttgtagttaacactgataaaggacgttgtagttaacactgctaaaggacgttgtagttaacactgataaaggacgttgtagttaacactgataaaggacgttgtactgtagttaacactgataaaggatgttgtagttaacactgataaaggacgttgtagttaacactgctaaaggacgttgtagttaacactgataaaggacgttgtagttaacactgataaaggacgttgtagttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245218 lncRNA upstream 1995 1061700 ~ 1062185 (+) True G215446
TU245217 lncRNA upstream 2633 1060846 ~ 1061547 (+) True G215445
TU245215 lncRNA upstream 6982 1055881 ~ 1057198 (+) True G215444
TU245193 lncRNA upstream 42791 1021048 ~ 1021389 (+) True G215428
TU245192 lncRNA upstream 43910 1019998 ~ 1020270 (+) True G215427
TU245225 lncRNA downstream 5277 1071400 ~ 1072095 (+) True G215452
TU245243 lncRNA downstream 43323 1109446 ~ 1109841 (+) True G215463
TU245254 lncRNA downstream 59204 1125327 ~ 1126525 (+) False LOC118944464
TU245256 lncRNA downstream 60984 1127107 ~ 1127511 (+) False LOC118944464
TU245257 lncRNA downstream 60984 1127107 ~ 1130309 (+) False LOC118944464
XM_036965307.1 mRNA upstream 119349 940563 ~ 944831 (+) True irx1a
XM_036975418.1 mRNA upstream 847777 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 867664 195431 ~ 196516 (+) True LOC118964343
XR_005039802.1 mRNA downstream 59194 1125317 ~ 1128772 (+) False LOC118944464
XR_005040035.1 mRNA downstream 240884 1307007 ~ 1309337 (+) True LOC118944732
XR_005040036.1 mRNA downstream 469756 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 479134 1545257 ~ 1567659 (+) True LOC118964346
XM_036965368.1 mRNA downstream 543581 1609704 ~ 1611504 (+) True LOC118944738
TU244628 other upstream 545993 516360 ~ 518187 (+) True G215012
TU245231 other downstream 18319 1084442 ~ 1086530 (+) True G215455
TU245689 other downstream 457146 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 543515 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 569475 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 575528 1641651 ~ 1680107 (+) True LOC118944469

Expression Profile