RNA id: TU245225


Basic Information

Item Value
RNA id TU245225
length 444
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G215452
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1071400 ~ 1072095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggctagggtcagtttgttatatctggagtacttctcctgtcctattcggtgtcctgtgtgaatctaagtgtgcgttctctaattctctccttctctctttctctctctcggaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactattctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttgaccatgttttgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttcttcacctgcattgcttgctgtttggggttttaggctgggtttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245220 lncRNA upstream 5277 1064180 ~ 1066123 (+) False G215448
TU245221 lncRNA upstream 5277 1065393 ~ 1066123 (+) True G215448
TU245218 lncRNA upstream 9215 1061700 ~ 1062185 (+) True G215446
TU245217 lncRNA upstream 9853 1060846 ~ 1061547 (+) True G215445
TU245215 lncRNA upstream 14202 1055881 ~ 1057198 (+) True G215444
TU245243 lncRNA downstream 37351 1109446 ~ 1109841 (+) True G215463
TU245254 lncRNA downstream 53232 1125327 ~ 1126525 (+) False LOC118944464
TU245256 lncRNA downstream 55012 1127107 ~ 1127511 (+) False LOC118944464
TU245257 lncRNA downstream 55012 1127107 ~ 1130309 (+) False LOC118944464
TU245258 lncRNA downstream 55012 1127107 ~ 1129089 (+) False LOC118944464
XM_036965307.1 mRNA upstream 126569 940563 ~ 944831 (+) True irx1a
XM_036975418.1 mRNA upstream 854997 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 874884 195431 ~ 196516 (+) True LOC118964343
XR_005039802.1 mRNA downstream 53222 1125317 ~ 1128772 (+) False LOC118944464
XR_005040035.1 mRNA downstream 234912 1307007 ~ 1309337 (+) True LOC118944732
XR_005040036.1 mRNA downstream 463784 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 473162 1545257 ~ 1567659 (+) True LOC118964346
XM_036965368.1 mRNA downstream 537609 1609704 ~ 1611504 (+) True LOC118944738
TU244628 other upstream 553213 516360 ~ 518187 (+) True G215012
TU245231 other downstream 12347 1084442 ~ 1086530 (+) True G215455
TU245689 other downstream 451174 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 537543 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 563503 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 569556 1641651 ~ 1680107 (+) True LOC118944469

Expression Profile