RNA id: TU245348


Basic Information

Item Value
RNA id TU245348
length 239
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G215544
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1310354 ~ 1311062 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTAGATCAACTCTAGATCAACCCTAGATCATCCCTAGATCACAACATGATGCACTAATAAAAGCCCTAGATCAGCCCTAGATCAACCCTAGATCAACCCTAGATCATCCCTAGATCAAAACATGATGCACTAATAAAAGCCCTAGATCAGCCCTAGATCAACTCTAGATCAACCCTAGATCAACTCTAGATCAGCCCTAGATCAACCCTAGATCAACCCTAGATCAACCCTAGATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245327 lncRNA upstream 23834 1285796 ~ 1286520 (+) True G215531
TU245324 lncRNA upstream 45040 1264547 ~ 1265314 (+) True G215528
TU245279 lncRNA upstream 154469 1154378 ~ 1155885 (+) True G215491
TU245257 lncRNA upstream 180045 1127107 ~ 1130309 (+) False LOC118944464
TU245258 lncRNA upstream 181265 1127107 ~ 1129089 (+) False LOC118944464
TU245376 lncRNA downstream 48320 1359382 ~ 1361280 (+) True G215555
TU245387 lncRNA downstream 64852 1375914 ~ 1405461 (+) False G215560
TU245383 lncRNA downstream 93629 1404691 ~ 1405461 (+) True G215560
TU245403 lncRNA downstream 97469 1408531 ~ 1409603 (+) False G215575
TU245404 lncRNA downstream 97469 1408531 ~ 1418926 (+) False G215575
XR_005040035.1 mRNA upstream 1017 1307007 ~ 1309337 (+) True LOC118944732
XR_005039802.1 mRNA upstream 181582 1125317 ~ 1128772 (+) False LOC118944464
XM_036965307.1 mRNA upstream 365523 940563 ~ 944831 (+) True irx1a
XM_036975418.1 mRNA upstream 1093951 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 1113838 195431 ~ 196516 (+) True LOC118964343
XR_005040036.1 mRNA downstream 224817 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 234195 1545257 ~ 1567659 (+) True LOC118964346
XM_036965368.1 mRNA downstream 298642 1609704 ~ 1611504 (+) True LOC118944738
XM_036963971.1 mRNA downstream 304484 1615546 ~ 1618046 (+) True LOC118944466
XM_036975422.1 mRNA downstream 311095 1622157 ~ 1626290 (+) True LOC118964347
TU245231 other upstream 223824 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 792167 516360 ~ 518187 (+) True G215012
TU245689 other downstream 212207 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 298576 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 324536 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 330589 1641651 ~ 1680107 (+) True LOC118944469
TU245758 other downstream 359349 1670411 ~ 1747282 (+) True G215830

Expression Profile