RNA id: TU245387


Basic Information

Item Value
RNA id TU245387
length 418
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G215560
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1375914 ~ 1405461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACctgtcaccacgctgcttggACCTGTTttgggtgggtgattctgtcacggcagatgtcctcctcttcctctgaagaggtgaaacaaggatcggaccaatacgcagcgtggtaagtgtccatgACTATAGTTGTTAGGTAGCTGTCTTTATATAGGGAGAAGACTATAGTCGTTAGGTAGCTGTCTTTATATAGGGAGAAGACTATAGTCGTTAGGTAGCTGTCTTTATATAGGGAGAAGACTATAGTTGTTAGGTAGCTGTCTTTATATAGGGAGAAGACTATAGTCGTTAGGTAGCTGTCTTTATATAGGGAGAAGACTATAGTTGTTAGGTAGCTGTCTTTATATAGGGAGAAGACTATAGTTGTTAGGTAGCTGTCTTTATATAGGGAGAAGACTATAGTTGTTAGGTAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245376 lncRNA upstream 14634 1359382 ~ 1361280 (+) True G215555
TU245348 lncRNA upstream 64852 1310354 ~ 1311062 (+) True G215544
TU245327 lncRNA upstream 89394 1285796 ~ 1286520 (+) True G215531
TU245324 lncRNA upstream 110600 1264547 ~ 1265314 (+) True G215528
TU245279 lncRNA upstream 220029 1154378 ~ 1155885 (+) True G215491
TU245403 lncRNA downstream 3070 1408531 ~ 1409603 (+) False G215575
TU245404 lncRNA downstream 3070 1408531 ~ 1418926 (+) False G215575
TU245405 lncRNA downstream 3070 1408531 ~ 1418640 (+) True G215575
TU245412 lncRNA downstream 22735 1428196 ~ 1431723 (+) True G215582
TU245424 lncRNA downstream 38860 1444321 ~ 1445675 (+) False G215591
XR_005040035.1 mRNA upstream 66577 1307007 ~ 1309337 (+) True LOC118944732
XR_005039802.1 mRNA upstream 247142 1125317 ~ 1128772 (+) False LOC118944464
XM_036965307.1 mRNA upstream 431083 940563 ~ 944831 (+) True irx1a
XM_036975418.1 mRNA upstream 1159511 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 1179398 195431 ~ 196516 (+) True LOC118964343
XR_005040036.1 mRNA downstream 130418 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 139796 1545257 ~ 1567659 (+) True LOC118964346
XM_036965368.1 mRNA downstream 204243 1609704 ~ 1611504 (+) True LOC118944738
XM_036963971.1 mRNA downstream 210085 1615546 ~ 1618046 (+) True LOC118944466
XM_036975422.1 mRNA downstream 216696 1622157 ~ 1626290 (+) True LOC118964347
TU245231 other upstream 289384 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 857727 516360 ~ 518187 (+) True G215012
TU245689 other downstream 117808 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 204177 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 230137 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 236190 1641651 ~ 1680107 (+) True LOC118944469
TU245758 other downstream 264950 1670411 ~ 1747282 (+) True G215830

Expression Profile