RNA id: TU245403


Basic Information

Item Value
RNA id TU245403
length 267
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G215575
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1408531 ~ 1418926 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTAGTTCTACTGTTAGCTTGGGAACTTCTATTACCTCCTCCATAGAGGTGtgttgaggtatcttcctccatagagatgtgttgaggtatcttcctccgtagaggtatcttcctccatagaggtgtgtagaggtatcttcctccatagaggtgtgttgaggtatcttcctccatagaggtgtgtagaggtatcttcctccattgaggtatcttcctccatagaggtgtgttgaggtatcttcctccgttgaggtatcttcctccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245387 lncRNA upstream 3070 1375914 ~ 1405461 (+) False G215560
TU245383 lncRNA upstream 3070 1404691 ~ 1405461 (+) True G215560
TU245376 lncRNA upstream 47251 1359382 ~ 1361280 (+) True G215555
TU245348 lncRNA upstream 97469 1310354 ~ 1311062 (+) True G215544
TU245327 lncRNA upstream 122011 1285796 ~ 1286520 (+) True G215531
TU245412 lncRNA downstream 18593 1428196 ~ 1431723 (+) True G215582
TU245424 lncRNA downstream 34718 1444321 ~ 1445675 (+) False G215591
TU245425 lncRNA downstream 35093 1444696 ~ 1448803 (+) True G215591
TU245660 lncRNA downstream 68515 1478118 ~ 1480022 (+) False G215777
TU245662 lncRNA downstream 68862 1478465 ~ 1479361 (+) False G215777
XR_005040035.1 mRNA upstream 99194 1307007 ~ 1309337 (+) True LOC118944732
XR_005039802.1 mRNA upstream 279759 1125317 ~ 1128772 (+) False LOC118944464
XM_036965307.1 mRNA upstream 463700 940563 ~ 944831 (+) True irx1a
XM_036975418.1 mRNA upstream 1192128 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 1212015 195431 ~ 196516 (+) True LOC118964343
XR_005040036.1 mRNA downstream 126276 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 135654 1545257 ~ 1567659 (+) True LOC118964346
XM_036965368.1 mRNA downstream 200101 1609704 ~ 1611504 (+) True LOC118944738
XM_036963971.1 mRNA downstream 205943 1615546 ~ 1618046 (+) True LOC118944466
XM_036975422.1 mRNA downstream 212554 1622157 ~ 1626290 (+) True LOC118964347
TU245231 other upstream 322001 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 890344 516360 ~ 518187 (+) True G215012
TU245689 other downstream 113666 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 200035 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 225995 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 232048 1641651 ~ 1680107 (+) True LOC118944469
TU245758 other downstream 260808 1670411 ~ 1747282 (+) True G215830

Expression Profile