RNA id: TU245425


Basic Information

Item Value
RNA id TU245425
length 1003
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G215591
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1444321 ~ 1448803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTCCCAGCAGTAGCCAGCCTGGGTCCTGGAGTTTCCCAGCAGTAGCCTGCCTAGACTAAATTGCTCTGATCAAAATCTACACAGGCTGCAACTGTTAGCTTCCAACccaatacatttaaatacatCTTTAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTTAACATCAGTAGTGGTTCATCTTTAGTCTACTTAACATCAGTAGTGGTTCATCTTTAGTCTACTTAACATCAGTAGTGGTTCATCAATAGTCTACTTAACATCAGTAGTGGTTCATCTTTAGTCTACTTAACATCAGTAGTGGTTCATCAACAGTCTACTTAACATCAGTAGCAGTGCATCTTTAGTCTACTtagtgatatataggcctaaggccttGACATCGTGAGGCgggatgctagttctaataacaacaggtgggatgctagttctaataacaacaggcgggatgctagttctaataacaacaagtgggatgctagttctaataacaacagttctaataacaacaggtgggatgctagttctaataacaacaggtgggatgctagttctaataacaacagttctaataacaacaggtgggatgctagttctaataacaacaggtgggatgctagttctaataacaacaggtgggatgctagttctaataacaacaggtgggatgctagttctaataacaacaggtgggatgctagttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245412 lncRNA upstream 12973 1428196 ~ 1431723 (+) True G215582
TU245404 lncRNA upstream 25770 1408531 ~ 1418926 (+) False G215575
TU245405 lncRNA upstream 26056 1408531 ~ 1418640 (+) True G215575
TU245403 lncRNA upstream 35093 1408531 ~ 1409603 (+) False G215575
TU245387 lncRNA upstream 39235 1375914 ~ 1405461 (+) False G215560
TU245660 lncRNA downstream 29315 1478118 ~ 1480022 (+) False G215777
TU245662 lncRNA downstream 29662 1478465 ~ 1479361 (+) False G215777
TU245663 lncRNA downstream 29662 1478465 ~ 1480022 (+) False G215777
TU245664 lncRNA downstream 30934 1479737 ~ 1480022 (+) True G215777
TU245665 lncRNA downstream 31267 1480070 ~ 1480308 (+) True G215778
XR_005040035.1 mRNA upstream 135359 1307007 ~ 1309337 (+) True LOC118944732
XR_005039802.1 mRNA upstream 315924 1125317 ~ 1128772 (+) False LOC118944464
XM_036965307.1 mRNA upstream 499865 940563 ~ 944831 (+) True irx1a
XM_036975418.1 mRNA upstream 1228293 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 1248180 195431 ~ 196516 (+) True LOC118964343
XR_005040036.1 mRNA downstream 87076 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 96454 1545257 ~ 1567659 (+) True LOC118964346
XM_036965368.1 mRNA downstream 160901 1609704 ~ 1611504 (+) True LOC118944738
XM_036963971.1 mRNA downstream 166743 1615546 ~ 1618046 (+) True LOC118944466
XM_036975422.1 mRNA downstream 173354 1622157 ~ 1626290 (+) True LOC118964347
TU245231 other upstream 358166 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 926509 516360 ~ 518187 (+) True G215012
TU245689 other downstream 74466 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 160835 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 186795 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 192848 1641651 ~ 1680107 (+) True LOC118944469
TU245758 other downstream 221608 1670411 ~ 1747282 (+) True G215830

Expression Profile