RNA id: TU245663


Basic Information

Item Value
RNA id TU245663
length 227
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G215777
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1478118 ~ 1480022 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcagtatggtgataatatggtatggtgaggtccctcagtatggtgataatatggtatggtgataatatggtatggtgataatatggtatggtgaggtccctcagtatggtgataatatggtatggtgataatatggtatggtgaggtccctcagtatggtgataatatggtatggtgaaaatatggtatggtgataatatggtatggtgaggtctctcagtatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245202 lncRNA upstream 20257 1033921 ~ 1458208 (+) True G215436
TU245425 lncRNA upstream 29662 1444696 ~ 1448803 (+) True G215591
TU245424 lncRNA upstream 32790 1444321 ~ 1445675 (+) False G215591
TU245412 lncRNA upstream 46742 1428196 ~ 1431723 (+) True G215582
TU245404 lncRNA upstream 59539 1408531 ~ 1418926 (+) False G215575
TU245665 lncRNA downstream 48 1480070 ~ 1480308 (+) True G215778
TU245670 lncRNA downstream 1987 1482009 ~ 1483294 (+) True G215782
TU245701 lncRNA downstream 9330 1489352 ~ 1577030 (+) False G215792
TU245682 lncRNA downstream 11098 1491120 ~ 1520613 (+) False G215792
TU245685 lncRNA downstream 11098 1491120 ~ 1518205 (+) False G215792
XR_005040035.1 mRNA upstream 169128 1307007 ~ 1309337 (+) True LOC118944732
XR_005039802.1 mRNA upstream 349693 1125317 ~ 1128772 (+) False LOC118944464
XM_036965307.1 mRNA upstream 533634 940563 ~ 944831 (+) True irx1a
XM_036975418.1 mRNA upstream 1262062 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 1281949 195431 ~ 196516 (+) True LOC118964343
XR_005040036.1 mRNA downstream 55857 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 65235 1545257 ~ 1567659 (+) True LOC118964346
XM_036965368.1 mRNA downstream 129682 1609704 ~ 1611504 (+) True LOC118944738
XM_036963971.1 mRNA downstream 135524 1615546 ~ 1618046 (+) True LOC118944466
XM_036975422.1 mRNA downstream 142135 1622157 ~ 1626290 (+) True LOC118964347
TU245231 other upstream 391935 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 960278 516360 ~ 518187 (+) True G215012
TU245689 other downstream 43247 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 129616 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 155576 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 161629 1641651 ~ 1680107 (+) True LOC118944469
TU245758 other downstream 190389 1670411 ~ 1747282 (+) True G215830

Expression Profile