RNA id: TU245685


Basic Information

Item Value
RNA id TU245685
length 398
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G215792
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1489352 ~ 1577030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGaagggaatggaaccctgtgatgggaatggaattatgtgacgggaatggaaccatgtgatggggaatggaaccctgtgaaggGAATGGAATACttttatggggaatggaactctgttttggggaatggaaccctgttatggggaatggaaccctgttatggggaatggaatcctgtgaTGGGGAaaggaaccctgtgatggggaatggaaccctgtggtggggaatggaaccctgttatggggaatggaaccctgtgatggggaaaggaaccctgtgatggggaatggaaccctgtgatggggaatggaaccctgtgatggggaatggaaccctgcgatggggaatggaaccctgtgatgggaatggaatcctgtgacgggaatggaaccctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245670 lncRNA upstream 7826 1482009 ~ 1483294 (+) True G215782
TU245665 lncRNA upstream 10812 1480070 ~ 1480308 (+) True G215778
TU245663 lncRNA upstream 11098 1478465 ~ 1480022 (+) False G215777
TU245664 lncRNA upstream 11098 1479737 ~ 1480022 (+) True G215777
TU245662 lncRNA upstream 11759 1478465 ~ 1479361 (+) False G215777
TU245695 lncRNA downstream 3958 1522163 ~ 1531000 (+) False G215792
TU245735 lncRNA downstream 71102 1589307 ~ 1669578 (+) True G215815
TU245755 lncRNA downstream 141019 1659224 ~ 1682030 (+) True G215828
TU245776 lncRNA downstream 301217 1819422 ~ 1825947 (+) False LOC118944761
TU245775 lncRNA downstream 306961 1825166 ~ 1825947 (+) True LOC118944761
XR_005040035.1 mRNA upstream 181783 1307007 ~ 1309337 (+) True LOC118944732
XR_005039802.1 mRNA upstream 362348 1125317 ~ 1128772 (+) False LOC118944464
XM_036965307.1 mRNA upstream 546289 940563 ~ 944831 (+) True irx1a
XM_036975418.1 mRNA upstream 1274717 213740 ~ 216403 (+) True LOC118964344
XM_036975417.1 mRNA upstream 1294604 195431 ~ 196516 (+) True LOC118964343
XR_005040036.1 mRNA downstream 17674 1535879 ~ 1538143 (+) True LOC118944733
XM_036975421.1 mRNA downstream 27052 1545257 ~ 1567659 (+) True LOC118964346
XM_036965368.1 mRNA downstream 91499 1609704 ~ 1611504 (+) True LOC118944738
XM_036963971.1 mRNA downstream 97341 1615546 ~ 1618046 (+) True LOC118944466
XM_036975422.1 mRNA downstream 103952 1622157 ~ 1626290 (+) True LOC118964347
TU245231 other upstream 404590 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 972933 516360 ~ 518187 (+) True G215012
TU245689 other downstream 5064 1523269 ~ 1534081 (+) True G215792
TU245742 other downstream 91433 1609638 ~ 1616379 (+) True G215820
TU245747 other downstream 117393 1635598 ~ 1680107 (+) False LOC118944469
TU245748 other downstream 123446 1641651 ~ 1680107 (+) True LOC118944469
TU245758 other downstream 152206 1670411 ~ 1747282 (+) True G215830

Expression Profile