RNA id: TU245716


Basic Information

Item Value
RNA id TU245716
length 440
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G215804
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1491111 ~ 1518205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccattccccataacaggattccattccccttcacagggttccattccagtcacagggttccattccccataacagggtTCCGTTCCCCAtaacagggttccattccccatcacagggttccattccagatctcagggttccattccccatcacagggttcctttccccatcacagggttccattccccataacagggttccattccccaccacagggttccattccccatcacagggttccttTCCCCAtcacaggattccattccccataacagggttccattccccataacagggttccattccccaaaacagagttccattccccataaaaGTATTCCATTCccttcacagggttccattccccatcacatggttccattcccgtcacataattccattcccatcacagggttccattcccttCACAGTGTTCCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245680 lncRNA downstream 2325 1488532 ~ 1488786 (-) True G215790
TU245679 lncRNA downstream 4122 1486756 ~ 1486989 (-) True G215789
TU245673 lncRNA downstream 6340 1484280 ~ 1484771 (-) False G215785
TU245675 lncRNA downstream 6340 1484280 ~ 1484771 (-) True G215785
TU245668 lncRNA downstream 10055 1480792 ~ 1481056 (-) True G215781
TU245724 lncRNA upstream 9385 1521400 ~ 1530990 (-) True G215807
TU245720 lncRNA upstream 11279 1523294 ~ 1533926 (-) False G215806
TU245721 lncRNA upstream 20885 1532900 ~ 1533926 (-) True G215806
TU245728 lncRNA upstream 61267 1573282 ~ 1576916 (-) True LOC118936608
TU245732 lncRNA upstream 69965 1581980 ~ 1582274 (-) True G215813
XM_036975420.1 mRNA downstream 610080 879000 ~ 881031 (-) True LOC118964345
XM_036965290.1 mRNA downstream 975902 510967 ~ 515209 (-) True irx2a
XR_005040023.1 mRNA downstream 1240563 249038 ~ 250548 (-) False LOC118944729
XR_005040024.1 mRNA downstream 1240598 249038 ~ 250513 (-) False LOC118944729
XM_036965348.1 mRNA upstream 59662 1571677 ~ 1581702 (-) False LOC118936608
XR_005040037.1 mRNA upstream 62349 1574364 ~ 1575575 (-) True LOC118944736
XM_036965320.1 mRNA upstream 71101 1583116 ~ 1593615 (-) False LOC118944735
XM_036965332.1 mRNA upstream 71101 1583116 ~ 1593615 (-) True LOC118944735
XR_005040038.1 mRNA upstream 95026 1607041 ~ 1609598 (-) True LOC118944737
TU245090 other downstream 571438 915959 ~ 919673 (-) True G215354
TU244568 other downstream 1009502 481047 ~ 481609 (-) True G214982
TU244156 other downstream 1311520 177723 ~ 179591 (-) False G214663
TU245901 other upstream 88211 1600226 ~ 1618140 (-) True G215950
TU245911 other upstream 147065 1659080 ~ 1682022 (-) True G215956
TU245913 other upstream 149674 1661689 ~ 1663067 (-) False LOC110519742
TU245915 other upstream 414729 1926744 ~ 1952588 (-) True LOC110516567
TU246015 other upstream 545900 2057915 ~ 2058429 (-) True G216038

Expression Profile