RNA id: TU245735


Basic Information

Item Value
RNA id TU245735
length 355
lncRNA type read_through
GC content 0.57
exon number 2
gene id G215815
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1589307 ~ 1669578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggaaaggcgTGGGAGTTTGTGTGCTGCAAGTAGTTCTTGAACTGATGCGTCTACTGGGTCCACCACGAAAGCTGAATCTGACGCTGCGGCCAAGAGAGCTCACTTCTCTAGCCTCATTACTTCCTGATCCAGAAGAGCTTGACGAATCAGAGAGCCTGATCTGCATGGTGAGGTCAAGGGCGGGAACGACCACAGTGGATGTAGACTCCATCACCCAATTTGTAATATCCATGCACCTAGCACTAAACTCATCTCTGCTCATCTGAAATGTTAAAAGACCATACAGAGTTATTTGTTAACGGAGCTGCACTGCTGCACCATGTGTTTACTCAAGCTAGTCAATTAAAGCAGTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245701 lncRNA upstream 12277 1489352 ~ 1577030 (+) False G215792
TU245694 lncRNA upstream 54170 1494635 ~ 1535137 (+) False G215792
TU245683 lncRNA upstream 55385 1494635 ~ 1533922 (+) False G215792
TU245686 lncRNA upstream 58307 1491120 ~ 1531000 (+) False G215792
TU245695 lncRNA upstream 58307 1522163 ~ 1531000 (+) False G215792
TU245776 lncRNA downstream 149844 1819422 ~ 1825947 (+) False LOC118944761
TU245775 lncRNA downstream 155588 1825166 ~ 1825947 (+) True LOC118944761
TU245792 lncRNA downstream 253731 1923309 ~ 2021561 (+) True G215853
TU245835 lncRNA downstream 344289 2013867 ~ 2014326 (+) True G215894
TU245841 lncRNA downstream 353507 2023085 ~ 2023300 (+) True G215900
XM_036975421.1 mRNA upstream 21648 1545257 ~ 1567659 (+) True LOC118964346
XR_005040036.1 mRNA upstream 51164 1535879 ~ 1538143 (+) True LOC118944733
XR_005040035.1 mRNA upstream 279970 1307007 ~ 1309337 (+) True LOC118944732
XR_005039802.1 mRNA upstream 460535 1125317 ~ 1128772 (+) False LOC118944464
XM_036965307.1 mRNA upstream 644476 940563 ~ 944831 (+) True irx1a
XM_036965454.1 mRNA downstream 20180 1689758 ~ 1691571 (+) True LOC118944750
XM_036965438.1 mRNA downstream 26135 1695713 ~ 1697610 (+) True LOC118944749
XM_036965430.1 mRNA downstream 32178 1701756 ~ 1704997 (+) True LOC118944747
XM_036965416.1 mRNA downstream 39530 1709108 ~ 1717917 (+) True LOC118944744
XM_036965425.1 mRNA downstream 63340 1732918 ~ 1736240 (+) True LOC118944745
TU245689 other upstream 55226 1523269 ~ 1534081 (+) True G215792
TU245231 other upstream 502777 1084442 ~ 1086530 (+) True G215455
TU244628 other upstream 1071120 516360 ~ 518187 (+) True G215012
TU245758 other downstream 833 1670411 ~ 1747282 (+) True G215830
TU245773 other downstream 134810 1804388 ~ 1805255 (+) True G215843
TU245816 other downstream 291290 1960868 ~ 1966052 (+) False ahr1a
TU245815 other downstream 315405 1984983 ~ 1985796 (+) True ahr1a
TU246414 other downstream 791639 2461217 ~ 2462744 (+) True G216353

Expression Profile