RNA id: TU245957


Basic Information

Item Value
RNA id TU245957
length 422
lncRNA type intronic
GC content 0.46
exon number 2
gene id G215985
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 1941228 ~ 1941675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACACACAGCCTTTTTTCCAGCCAGAGATAGgaatcacaaaaagcagaaatatagataaaatgaatcactaacctttgatgatcttcatcagatgacactcataggacatcatgttacacaatacatgtatgttttgttcgataatgtgcatatttatatccaaaaatctcagtttacattggcgcattacgtgcagtaatgttttgataccaaaacatccggtgattttgcagaaatactcataataaacattgataaaatatacaagtgttattcacagaattaaagagactTCTCTGTCtctctgccagaccactgactcagaggtctcatgagcccctcctttatagtagaatcctcaaaccagtttctaaagacggctgacatctagtggaagccctaggaagtgcaacctcatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245943 lncRNA downstream 126441 1790947 ~ 1814787 (-) True G215973
TU245937 lncRNA downstream 135205 1775000 ~ 1806023 (-) True G215972
TU245935 lncRNA downstream 193912 1746930 ~ 1747316 (-) True LOC118944740
TU245909 lncRNA downstream 221269 1645154 ~ 1719959 (-) True G215954
TU246002 lncRNA upstream 84052 2025727 ~ 2025938 (-) True G216026
TU246003 lncRNA upstream 84572 2026247 ~ 2026792 (-) True G216027
TU246005 lncRNA upstream 90860 2032535 ~ 2032988 (-) True G216029
TU246007 lncRNA upstream 93701 2035376 ~ 2035667 (-) True G216031
TU246009 lncRNA upstream 97048 2038723 ~ 2038972 (-) True G216033
XM_036965548.1 mRNA downstream 30325 1906137 ~ 1910903 (-) True LOC110515047
XM_036965470.1 mRNA downstream 185433 1750419 ~ 1755795 (-) False LOC118944751
XR_005040050.1 mRNA downstream 185433 1750419 ~ 1755795 (-) True LOC118944751
XM_036965395.1 mRNA downstream 190966 1739961 ~ 1750262 (-) False LOC118944740
XR_005040067.1 mRNA upstream 232583 2174258 ~ 2190541 (-) False LOC118944769
XM_021581645.2 mRNA upstream 252122 2193797 ~ 2195426 (-) True LOC118936266
XM_036964001.1 mRNA upstream 284143 2225818 ~ 2229438 (-) False LOC118944471
XM_036964010.1 mRNA upstream 284143 2225818 ~ 2229438 (-) True LOC118944471
XM_036965628.1 mRNA upstream 301812 2243487 ~ 2249198 (-) False LOC110506602
TU245911 other downstream 259206 1659080 ~ 1682022 (-) True G215956
TU245913 other downstream 278161 1661689 ~ 1663067 (-) False LOC110519742
TU245901 other downstream 323088 1600226 ~ 1618140 (-) True G215950
TU245090 other downstream 1021555 915959 ~ 919673 (-) True G215354
TU244568 other downstream 1459619 481047 ~ 481609 (-) True G214982
TU246015 other upstream 116240 2057915 ~ 2058429 (-) True G216038
TU246052 other upstream 179528 2121203 ~ 2121857 (-) True G216066
TU246045 other upstream 182501 2124176 ~ 2125352 (-) True G216059
TU246996 other upstream 795186 2736861 ~ 2738467 (-) True G216811
TU247125 other upstream 1104330 3046005 ~ 3059744 (-) True G216902

Expression Profile