RNA id: TU245845


Basic Information

Item Value
RNA id TU245845
length 203
lncRNA type intronic
GC content 0.50
exon number 1
gene id G215904
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2030760 ~ 2030962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtatgtgtgcatgtgtgtgtgttgtctttaCTGCAGGGTGGGACATTTTTTTGCAGGTAAGTAATGCATTCACAGTGTACCTCCAGGGGGCACTGTTGCAGAGGGATTTGGGTTTCTATCCCAGATGGACCCACTGTCCTACCTATCGTTACCCTTATGCACCTTGTACACTAGCAGGTGGTGCCGCGCTGTGAAACACCGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245841 lncRNA upstream 7460 2023085 ~ 2023300 (+) True G215900
TU245792 lncRNA upstream 9199 1923309 ~ 2021561 (+) True G215853
TU245835 lncRNA upstream 16434 2013867 ~ 2014326 (+) True G215894
TU245776 lncRNA upstream 204813 1819422 ~ 1825947 (+) False LOC118944761
TU245775 lncRNA upstream 204813 1825166 ~ 1825947 (+) True LOC118944761
TU245847 lncRNA downstream 1188 2032150 ~ 2032404 (+) True G215906
TU245851 lncRNA downstream 6938 2037900 ~ 2038204 (+) True G215910
TU245852 lncRNA downstream 7313 2038275 ~ 2038516 (+) True G215911
TU245854 lncRNA downstream 9062 2040024 ~ 2042177 (+) True G215912
TU245855 lncRNA downstream 9494 2040456 ~ 2040784 (+) True G215913
XM_036965551.1 mRNA upstream 43280 1960781 ~ 1987480 (+) False ahr1a
LOC118944758 mRNA upstream 145854 1882585 ~ 1884906 (+) True LOC118944758
LOC118944757 mRNA upstream 152676 1875760 ~ 1878084 (+) True LOC118944757
XM_036965491.1 mRNA upstream 167534 1860933 ~ 1863226 (+) True LOC118944756
XM_036965516.1 mRNA upstream 203261 1824933 ~ 1827499 (+) False LOC118944761
XM_036965575.1 mRNA downstream 32036 2062998 ~ 2123904 (+) False LOC110513668
XM_036965567.1 mRNA downstream 32038 2063000 ~ 2123904 (+) False LOC110513668
XM_036965563.1 mRNA downstream 32040 2063002 ~ 2123904 (+) False LOC110513668
XM_036965557.1 mRNA downstream 32042 2063004 ~ 2123904 (+) False LOC110513668
XM_036965586.1 mRNA downstream 32846 2063808 ~ 2123904 (+) False LOC110513668
TU245815 other upstream 44964 1984983 ~ 1985796 (+) True ahr1a
TU245816 other upstream 64708 1960868 ~ 1966052 (+) False ahr1a
TU245773 other upstream 225505 1804388 ~ 1805255 (+) True G215843
TU245758 other upstream 283478 1670411 ~ 1747282 (+) True G215830
TU245748 other upstream 350653 1641651 ~ 1680107 (+) True LOC118944469
TU246414 other downstream 430255 2461217 ~ 2462744 (+) True G216353
TU246526 other downstream 541433 2572395 ~ 2574899 (+) False G216438
TU246778 other downstream 986202 3017164 ~ 3019834 (+) False LOC110506718
TU246775 other downstream 1009024 3039986 ~ 3041517 (+) True G216640
TU246830 other downstream 1075392 3106354 ~ 3108233 (+) False G216673

Expression Profile