RNA id: TU246200


Basic Information

Item Value
RNA id TU246200
length 566
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G216188
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2241730 ~ 2242295 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aactgaaatggtgacctggtgtgtatgaattaatatcacttacattttgacagataagtaatatataactgaaatggtgacctggtgtgtatgaattaatatcacttacattttgacagataagtaatatataactgaaatggtgacctggtgtgtatgaagtaatatcacttacatttagacagataagtaatatataactgaaatggtgacctggtgtgtatgaattaatatcacttacattttgacagataagtaatatataactgaaatggtgacctggtgtgtatgaattaatatcacttacattttgacagataagtaatatataactgaaatggtgacctggtgtgtatgaattaatatcacttacattttgacagataagtaatctATAAcagaaatggtgacctggtgtgtatgaattaatatcacttacatttagacagataagtaatatataactgaaatggtgacctggtgtgtatgaagtaatatcacttacattttgacagataagtaatatataactgaaatggtgacctggtgtgtatgaattaatatca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246199 lncRNA downstream 61 2240840 ~ 2241669 (-) True G216187
TU246197 lncRNA downstream 2292 2238671 ~ 2239438 (-) True G216185
TU246198 lncRNA downstream 4030 2237129 ~ 2237700 (-) True G216186
TU246196 lncRNA downstream 5924 2234742 ~ 2235806 (-) True G216184
TU246157 lncRNA downstream 51482 2175733 ~ 2190248 (-) True LOC118944769
TU246186 lncRNA upstream 5484 2247779 ~ 2249345 (-) True LOC110506602
TU246211 lncRNA upstream 25420 2267715 ~ 2270831 (-) True G216199
TU246214 lncRNA upstream 34566 2276861 ~ 2278197 (-) True G216200
TU246218 lncRNA upstream 37001 2279296 ~ 2284314 (-) True G216202
TU246248 lncRNA upstream 60651 2302946 ~ 2303148 (-) True G216216
XM_036964001.1 mRNA downstream 12292 2225818 ~ 2229438 (-) False LOC118944471
XM_036964010.1 mRNA downstream 12292 2225818 ~ 2229438 (-) True LOC118944471
XM_021581645.2 mRNA downstream 46304 2193797 ~ 2195426 (-) True LOC118936266
XR_005040067.1 mRNA downstream 51189 2174258 ~ 2190541 (-) False LOC118944769
XM_036965532.1 mRNA downstream 288367 1916571 ~ 1953363 (-) False LOC110516567
XM_036965628.1 mRNA upstream 1192 2243487 ~ 2249198 (-) False LOC110506602
XM_036965622.1 mRNA upstream 1192 2243487 ~ 2249508 (-) False LOC110506602
XM_036965617.1 mRNA upstream 1192 2243487 ~ 2249509 (-) False LOC110506602
XM_021586374.2 mRNA upstream 43999 2286294 ~ 2289546 (-) False sp8b
XM_021586367.2 mRNA upstream 43999 2286294 ~ 2289553 (-) False sp8b
TU246045 other downstream 116378 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 119873 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 183301 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 289142 1926744 ~ 1952588 (-) True LOC110516567
TU245913 other downstream 578663 1661689 ~ 1663067 (-) False LOC110519742
TU246996 other upstream 494566 2736861 ~ 2738467 (-) True G216811
TU247125 other upstream 803710 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 1095891 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 1444107 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 2196801 4439096 ~ 4440061 (-) False G218073

Expression Profile