RNA id: TU246211


Basic Information

Item Value
RNA id TU246211
length 1371
lncRNA type antisense_over
GC content 0.36
exon number 3
gene id G216199
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2267715 ~ 2270831 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCACATTGTATTTACATGAGGATATATTTATGATATAATATATTGATAATGTGTTTCTGTTATCTACTGTACTCATTATCACTTGCCGAGTCATTAGAGCCTCTATATCAACTCCAGGAATTTGAATACATCCGTCAGTTGAGTTCAATAAAGCGCTGATCTCCTCCACAGTGAAATTGGCTATGGAGAAATGACAATACCAGTAGTCAATGTTCACAATCTGGCGTGCCTAACATATGATATGTGTAGTATAAAACATAATCCACAAATCAccattgtacatggtgaAGATATGCCTAAACAATGCAACCCATAATAGACATAATCACATATGTAGCTCACTGTAATACATGGCCACAAAGGATCCCTGCACTTTATAGCCAATACACAGATGTaaaatcttaatttgagccagtttgctacagcaggaaaataatcctgcagcaacaggacaggtggattataatgaatgggcATTGAATGGTGCTGGATTGGATAGCGGCCGTTTGACTAGTTCCTGACCAATTCTGCTGTTTAGTGtggttttttgtgtgtgtttttgttgttgcatatCCCCCTGTGTTTGATGGTCTTTTTTGTTAGGCTACATATACATTTTACACACGTTTTACATACATGGCACTTCTTTTAATGATAAAAAAACTATTTACATACCGTCAGGAGTCAATTATTTGAGTACACAATATGACATTTCATAGGAAGGAAGTAGAGTTTATAATACAATATGTTGTATATTATTCTCAGAAAATAAAATGTCGTCCCACCACTCACATTGTAGGTCTGTTGCTTGGTCAAGAGTTGTTGATACCTGATACAGTTTTACATAATACATCCCATGCATCAACTGTATTTGTCCGAGCATTGTTTATCACAGCCACGGATCGCTCTATACAAACATGATCTTGAAAATATGATAACCATGTTTGTGGTGAGAGGATTGCAGGGGTAATCGAAGCACTAAGGATAACTTGTTTTGTTGCTGTTAACTCTGCATAAATGAAATGGTCATTTTCTGAACCAGCTGCAGtcatacatggtacttttatacaCAGTAATTACACAACAAATATATCTGTTTCTGGATTATACACATTACATTTTGGATAGATACTGGATATGTACTCAGACATCTATATAGTGTTTTCAGTAAGAACTATCACTGATCATAAGCGTTTTAATCTCACCCCTCTGCTACTCTCAGTCCAGCCCACCTAAATGTATGTCCGTAAGACCATCCTCTTTTGATTTCCACGAGCCATATATCTTTCGACTGTGCTGTGATGTCTTATATGAATTTTGAACCTTTCTAATGACATAGTATCCAAAGATTGTAAGTTAAAGATTAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246186 lncRNA downstream 18370 2247779 ~ 2249345 (-) True LOC110506602
TU246200 lncRNA downstream 25420 2241730 ~ 2242295 (-) True G216188
TU246199 lncRNA downstream 26046 2240840 ~ 2241669 (-) True G216187
TU246197 lncRNA downstream 28277 2238671 ~ 2239438 (-) True G216185
TU246198 lncRNA downstream 30015 2237129 ~ 2237700 (-) True G216186
TU246214 lncRNA upstream 6030 2276861 ~ 2278197 (-) True G216200
TU246218 lncRNA upstream 8465 2279296 ~ 2284314 (-) True G216202
TU246248 lncRNA upstream 32115 2302946 ~ 2303148 (-) True G216216
TU246249 lncRNA upstream 33544 2304375 ~ 2304578 (-) True G216217
TU246257 lncRNA upstream 38332 2309163 ~ 2309366 (-) True G216225
XM_036965617.1 mRNA downstream 18206 2243487 ~ 2249509 (-) False LOC110506602
XM_036965622.1 mRNA downstream 18207 2243487 ~ 2249508 (-) False LOC110506602
XM_036965628.1 mRNA downstream 18517 2243487 ~ 2249198 (-) False LOC110506602
XM_036964001.1 mRNA downstream 38277 2225818 ~ 2229438 (-) False LOC118944471
XM_036964010.1 mRNA downstream 38277 2225818 ~ 2229438 (-) True LOC118944471
XM_021586374.2 mRNA upstream 15463 2286294 ~ 2289546 (-) False sp8b
XM_021586367.2 mRNA upstream 15463 2286294 ~ 2289553 (-) False sp8b
XM_036965672.1 mRNA upstream 15463 2286294 ~ 2292006 (-) True sp8b
XR_005040075.1 mRNA upstream 83452 2354283 ~ 2388299 (-) True LOC118944775
XM_036965683.1 mRNA upstream 190332 2461163 ~ 2507159 (-) False LOC118944776
TU246045 other downstream 142363 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 145858 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 209286 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 315127 1926744 ~ 1952588 (-) True LOC110516567
TU245913 other downstream 604648 1661689 ~ 1663067 (-) False LOC110519742
TU246996 other upstream 466030 2736861 ~ 2738467 (-) True G216811
TU247125 other upstream 775174 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 1067355 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 1415571 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 2168265 4439096 ~ 4440061 (-) False G218073

Expression Profile