RNA id: TU246611


Basic Information

Item Value
RNA id TU246611
length 275
lncRNA type intronic
GC content 0.46
exon number 1
gene id G216506
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2648474 ~ 2648748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTAGATCTAGCCCTGTGAAAGCTTGCCTCCTCCACAGTGATTCGATCTAGTCCTGTGAAAGCTTGTCTCCTCCACAGTGATTAGATCTTGCCCTGTGAAAGCTTGTCTCCTACACAGTGATTAGATCTAGCCCTCTGAAAGGAGTTTACCCAGAGTGTTGATGTTTATGTCTATGTCCATACCTCTCTGCATCAGACCATGTGGAGAGTTTATTGATACAGTGTAGGCTATGTACACGCCTGGCTGTCACAACTGGAGACTTCGTTCATAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246604 lncRNA upstream 9533 2638604 ~ 2638941 (+) True G216500
TU246584 lncRNA upstream 38022 2610213 ~ 2610452 (+) True G216487
TU246528 lncRNA upstream 74186 2572395 ~ 2574288 (+) True G216438
TU246521 lncRNA upstream 81456 2566375 ~ 2567018 (+) True G216433
TU246498 lncRNA upstream 111436 2536689 ~ 2537038 (+) True G216416
TU246616 lncRNA downstream 14438 2663186 ~ 2663488 (+) True G216511
TU246624 lncRNA downstream 23038 2671786 ~ 2672025 (+) True G216517
TU246627 lncRNA downstream 25173 2673921 ~ 2674503 (+) True G216520
TU246646 lncRNA downstream 59717 2708465 ~ 2708668 (+) True G216539
TU246649 lncRNA downstream 63891 2712639 ~ 2712910 (+) True G216542
XR_005039814.1 mRNA upstream 229342 2414471 ~ 2419132 (+) True LOC118944474
XM_036965630.1 mRNA upstream 364160 2258551 ~ 2284314 (+) False abcb5
XM_036965707.1 mRNA downstream 156584 2805332 ~ 2853339 (+) True fhod3b
XM_036965722.1 mRNA downstream 222664 2871412 ~ 2883105 (+) False LOC110517892
XM_036965719.1 mRNA downstream 222671 2871419 ~ 2883602 (+) False LOC110517892
XM_036965720.1 mRNA downstream 222671 2871419 ~ 2883602 (+) True LOC110517892
XM_036965726.1 mRNA downstream 275693 2924441 ~ 2943873 (+) False LOC110520727
TU246526 other upstream 73575 2572395 ~ 2574899 (+) False G216438
TU246414 other upstream 185730 2461217 ~ 2462744 (+) True G216353
TU245815 other upstream 662678 1984983 ~ 1985796 (+) True ahr1a
TU245816 other upstream 682422 1960868 ~ 1966052 (+) False ahr1a
TU245773 other upstream 843219 1804388 ~ 1805255 (+) True G215843
TU246778 other downstream 368416 3017164 ~ 3019834 (+) False LOC110506718
TU246775 other downstream 391238 3039986 ~ 3041517 (+) True G216640
TU246830 other downstream 457606 3106354 ~ 3108233 (+) False G216673
TU246814 other downstream 457863 3106611 ~ 3108233 (+) False G216673
TU247395 other downstream 831568 3480316 ~ 3481536 (+) True G217146

Expression Profile