RNA id: TU246996


Basic Information

Item Value
RNA id TU246996
length 1291
RNA type TUCP
GC content 0.43
exon number 2
gene id G216811
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2736861 ~ 2738467 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tactatactgcctactccattatataccatactgcctactccatTATATACCATAAtgcctactccatgatataccatactgcctactccattatataccatactgcctactccatgatataccatactgcctactccatgatataccatactacctactccatgatataccatactacctactccatgatataccatactgcctactccatggatatactatactgcctactccaggatataccatactgcctactccatgatataccatactACCTACTCCATGATACACCATACTGGATAGTCCATGATATACCATAATGCCTACTCCACGATATACCATAATGTctactccatgatataccataatgcctactccatgatataccatactgcctactccatgataaaccataatgcctactccatgatataccatactgcctactccatgatataccatactgcctactccatgatataccatactACCTACTCCATGATACACCATACTGGATAGTCCATGATATACCATAAtgcctactccatgatataccataatgtctactccatgatataccatactgcctactccatgatataccatactACCTACTCCATGATACACCATACTGGATAGTCCATGATATACCATAAtgcctactccatgatataccataatgtctactccatgatataccataatgcctactccatgatataccatactgcctactccatgatataccataaTGTCTACTCCAGGATATACCATAAtgcctactccatgatataccatactgcctactccatgatataccataaTGTCTACTCCAGGATATACCATAATGCCTACTCCAGGATATACTATACTGCCTACTCCAGGATATACTATACTGCCTACTCCATGGATATACTATACTGCCTACTCCAGGATATACCATAATGCCTACTCCAGGATATACTATACTGCCTACTCCAGGATATACTATACTGCATATGCAACCAGGATATACTATACTGCCTACACCATGGATATACTATACTGCCTACTCCAGGATATACTATACTGCCTACTCCATGGATATACTATACTGCATATGCAACCAGGATATACTATACTGCCTACACCATGGATATACTATACTGCCTACTCCAGGATATACCATAATGCCTACTCCGTAGATATACTATACTGCCTACTCTATGGATATACTATACTGCCTACTCCAGGATATACTATACTGCTTACTCCAGgatataccatactgcctactcCAGGATATACTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246995 lncRNA downstream 1096 2735534 ~ 2735765 (-) True G216810
TU246993 lncRNA downstream 5041 2731024 ~ 2731820 (-) True G216808
TU246992 lncRNA downstream 6384 2730161 ~ 2730477 (-) True G216807
TU246986 lncRNA downstream 23816 2712733 ~ 2713045 (-) True G216801
TU246985 lncRNA downstream 25143 2711387 ~ 2711718 (-) True G216800
TU246999 lncRNA upstream 26608 2765075 ~ 2765934 (-) True G216814
TU247004 lncRNA upstream 34023 2772490 ~ 2775298 (-) True G216819
TU247022 lncRNA upstream 71530 2809997 ~ 2813669 (-) True G216837
TU247046 lncRNA upstream 110764 2849231 ~ 2853337 (-) False G216859
TU247047 lncRNA upstream 110764 2849231 ~ 2851246 (-) True G216859
XM_036965697.1 mRNA downstream 132095 2583240 ~ 2604766 (-) True LOC110520772
XM_036965694.1 mRNA downstream 155421 2567040 ~ 2581440 (-) True LOC110519055
XM_036975424.1 mRNA downstream 183489 2546234 ~ 2553372 (-) True LOC118964348
XM_036965688.1 mRNA downstream 214951 2461163 ~ 2521910 (-) False LOC118944776
XM_036965683.1 mRNA downstream 229702 2461163 ~ 2507159 (-) False LOC118944776
XM_036965710.1 mRNA upstream 117631 2856098 ~ 2869094 (-) False LOC110517891
XM_036965714.1 mRNA upstream 117631 2856098 ~ 2869094 (-) True LOC110517891
NM_001124385.1 mRNA upstream 150604 2889071 ~ 2916338 (-) False c4b
XM_036963128.1 mRNA upstream 150604 2889071 ~ 2916355 (-) False c4b
XM_036963137.1 mRNA upstream 150604 2889071 ~ 2916355 (-) True c4b
TU246045 other downstream 611509 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 615004 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 678432 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 784273 1926744 ~ 1952588 (-) True LOC110516567
TU245911 other downstream 1054839 1659080 ~ 1682022 (-) True G215956
TU247125 other upstream 307538 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 599719 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 947935 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1700629 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 1700629 4439096 ~ 4440437 (-) True G218073

Expression Profile