RNA id: TU247067



Basic Information


Item Value
RNA id TU247067
length 382
lncRNA type read_through
GC content 0.41
exon number 2
gene id G216871
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 2907312 ~ 2981783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gacaattcctgcttgtgtctgcctagcatcgctccctggatctcgacggctgagtggagaggatccgaagtcgctgggtccattcttggtcggattcttctgttacggtgcgtgaatgaggacccaaaagcgaatcaacttaaacagagcttctttaattaccaaacataggtaggctcagatggaccggcagattccgacaggacaagacaaggttacagcaaacatgacgacagtctggttcaggcatgaatgacacaaacaaacaagaatccgacaaggacaggagcagaaacagagagagatatagggacctaatcagagggaaaaaagggaacaggtggggaacggggtgaatgggtagttagaggagacaagggac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU247057 lncRNA downstream 20878 2875190 ~ 2886434 (-) False G216868
TU247062 lncRNA downstream 27523 2875643 ~ 2879789 (-) True G216868
TU247046 lncRNA downstream 53975 2849231 ~ 2853337 (-) False G216859
TU247047 lncRNA downstream 56066 2849231 ~ 2851246 (-) True G216859
TU247022 lncRNA downstream 93643 2809997 ~ 2813669 (-) True G216837
TU247144 lncRNA upstream 16027 2997810 ~ 3004711 (-) True G216920
TU247152 lncRNA upstream 29979 3011762 ~ 3012035 (-) True G216925
TU247135 lncRNA upstream 38462 3020245 ~ 3021397 (-) True G216911
TU247161 lncRNA upstream 83370 3065153 ~ 3065479 (-) True G216934
TU247165 lncRNA upstream 92215 3073998 ~ 3074430 (-) True G216938
XM_036965710.1 mRNA downstream 38218 2856098 ~ 2869094 (-) False LOC110517891
XM_036965714.1 mRNA downstream 38218 2856098 ~ 2869094 (-) True LOC110517891
XM_036965697.1 mRNA downstream 302546 2583240 ~ 2604766 (-) True LOC110520772
XM_036965694.1 mRNA downstream 325872 2567040 ~ 2581440 (-) True LOC110519055
XM_036975424.1 mRNA downstream 353940 2546234 ~ 2553372 (-) True LOC118964348
XM_036965779.1 mRNA upstream 10441 2992224 ~ 2997421 (-) False LOC110520729
XM_036965771.1 mRNA upstream 10441 2992224 ~ 2997423 (-) False LOC110520729
XM_036965775.1 mRNA upstream 10441 2992224 ~ 2997425 (-) True LOC110520729
XM_036965793.1 mRNA upstream 41025 3022808 ~ 3058765 (-) False LOC110506699
XM_036965795.1 mRNA upstream 41025 3022808 ~ 3058765 (-) False LOC110506699
TU246996 other downstream 168845 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 781960 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 785455 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 848883 2057915 ~ 2058429 (-) True G216038
TU245915 other downstream 954724 1926744 ~ 1952588 (-) True LOC110516567
TU247125 other upstream 64222 3046005 ~ 3059744 (-) True G216902
TU247540 other upstream 356403 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 704619 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1457313 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 1457313 4439096 ~ 4440437 (-) True G218073

Expression Profile