RNA id: TU247165


Basic Information

Item Value
RNA id TU247165
length 433
lncRNA type intronic
GC content 0.39
exon number 1
gene id G216938
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3073998 ~ 3074430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtaaaacacacctatctgtctgtctacattCCTTCTGCCCTTGTCATGTTGTGACCATGTCCAGTAATTCTTTTGGATTATGTTACAGTACGACATCAGAGTAAAAAAGAACAATATTCTTGTATACTGTATCCGTATATACACCAGAGGCTTGTTAATGCCATTTCAACATCCCCCTTGTTTCCAGCTCTGCACTTGAGGTCAGTAACAACGTTATAATGATAGATACAGAAACTGATTTGTCCCATATTTGGTCAATCTCAATACTGTAAAAACAGGAACAGACCTGTAGTATTTCCAGATGCCATGGCCCAGTCTGACAGTCGCCTGTGATCTCATGCCACATGAAGTTGGTCTGGAGAGACAAAGGTGACAGTGGCTAACCATGTACCCTAACCATGTACCCTAATCATGTACCCTAATCATGtaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247161 lncRNA downstream 8519 3065153 ~ 3065479 (-) True G216934
TU247135 lncRNA downstream 52601 3020245 ~ 3021397 (-) True G216911
TU247152 lncRNA downstream 61963 3011762 ~ 3012035 (-) True G216925
TU247144 lncRNA downstream 69287 2997810 ~ 3004711 (-) True G216920
TU247104 lncRNA downstream 113169 2960045 ~ 2960829 (-) True G216893
TU247170 lncRNA upstream 7462 3081892 ~ 3082106 (-) True G216942
TU247172 lncRNA upstream 11748 3086178 ~ 3086802 (-) True G216944
TU247173 lncRNA upstream 13378 3087808 ~ 3088229 (-) True G216945
TU247174 lncRNA upstream 13879 3088309 ~ 3088542 (-) True G216946
TU247129 lncRNA upstream 29716 3104146 ~ 3105065 (-) False LOC110506763
XM_036965833.1 mRNA downstream 15233 3022808 ~ 3058765 (-) False LOC110506699
XM_036965873.1 mRNA upstream 17102 3091532 ~ 3098159 (-) True LOC110520730
XM_036975426.1 mRNA upstream 24838 3099268 ~ 3106240 (-) False LOC110506763
XM_036965874.1 mRNA upstream 32141 3106571 ~ 3120111 (-) True LOC118936609
XM_021586699.2 mRNA upstream 77579 3152009 ~ 3162923 (-) False LOC110506836
XR_005040124.1 mRNA upstream 163045 3237475 ~ 3238019 (-) True LOC118944808
TU247125 other downstream 14254 3046005 ~ 3059744 (-) True G216902
TU246996 other downstream 335531 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 948646 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 952141 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 1015569 2057915 ~ 2058429 (-) True G216038
TU247540 other upstream 263756 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 611972 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1364666 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 1364666 4439096 ~ 4440437 (-) True G218073
TU249887 other upstream 1464232 4538662 ~ 4540441 (-) True LOC118944829

Expression Profile