RNA id: TU247170



Basic Information


Item Value
RNA id TU247170
length 215
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G216942
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3081892 ~ 3082106 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gctcaaCATTCTCAACATTACAATATTACTCACTCTGGAGTCAATGGGAGGGACCGCCCCATTCACCATTATCGTGTTGAGCAGGGGAGAATCGCCCTTGTGTTGGGTAGATTAGCTTCTAAACTGACCAGCCCTTTtggagctcacacacacacaatcacacacacaaacacacacagagataagaGCAACcgtcatgacacacacacattttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU247165 lncRNA downstream 7462 3073998 ~ 3074430 (-) True G216938
TU247161 lncRNA downstream 16413 3065153 ~ 3065479 (-) True G216934
TU247135 lncRNA downstream 60495 3020245 ~ 3021397 (-) True G216911
TU247152 lncRNA downstream 69857 3011762 ~ 3012035 (-) True G216925
TU247144 lncRNA downstream 77181 2997810 ~ 3004711 (-) True G216920
TU247172 lncRNA upstream 4072 3086178 ~ 3086802 (-) True G216944
TU247173 lncRNA upstream 5702 3087808 ~ 3088229 (-) True G216945
TU247174 lncRNA upstream 6203 3088309 ~ 3088542 (-) True G216946
TU247129 lncRNA upstream 22040 3104146 ~ 3105065 (-) False LOC110506763
TU247139 lncRNA upstream 23189 3105295 ~ 3123981 (-) True LOC110506763
XM_021586648.2 mRNA downstream 5389 3058329 ~ 3076503 (-) True LOC110506785
XM_036965833.1 mRNA downstream 23127 3022808 ~ 3058765 (-) False LOC110506699
XM_036965873.1 mRNA upstream 9426 3091532 ~ 3098159 (-) True LOC110520730
XM_036975426.1 mRNA upstream 17162 3099268 ~ 3106240 (-) False LOC110506763
XM_036965874.1 mRNA upstream 24465 3106571 ~ 3120111 (-) True LOC118936609
XM_021586699.2 mRNA upstream 69903 3152009 ~ 3162923 (-) False LOC110506836
XR_005040124.1 mRNA upstream 155369 3237475 ~ 3238019 (-) True LOC118944808
TU247125 other downstream 22148 3046005 ~ 3059744 (-) True G216902
TU246996 other downstream 343425 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 956540 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 960035 2121203 ~ 2121857 (-) True G216066
TU246015 other downstream 1023463 2057915 ~ 2058429 (-) True G216038
TU247540 other upstream 256080 3338186 ~ 3338580 (-) True G217261
TU247757 other upstream 604296 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 1356990 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 1356990 4439096 ~ 4440437 (-) True G218073
TU249887 other upstream 1456556 4538662 ~ 4540441 (-) True LOC118944829

Expression Profile