RNA id: TU247736


Basic Information

Item Value
RNA id TU247736
length 919
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id G217439
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3636916 ~ 3644304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttgaaacctctgtatgtgtaatgtttactgttaatttttgttgtttttcactttatatattcactttgtatgttgtctacctcacttgctttggcaatgttaacacatgtttcccatgccaataaagcccttgaattgaattgaattgagaggagagatagagaggagaggagagatagagaggagagatagagagaggagagatagagaggagagagagaggagagatagatagagagagcagagatagaagatataggagaaagagagaagagataggagagagagatatagaggagagagagatagaggatagagagagaagagataggagagagagatatagaggagagagagagacatgtacttACTTCGGGGTGGACTTTGGGATGGAAGgtagcgctctctctccctctgttggtGATTGTTAGAGGGAGTTATATGTAGGGTTAGCAGTACAGTTACAGTCCATCAACAGGATCCATTCTAATGCCCACAGTCACACATGCATCATTATTAATATCATTTCATAATATGAGACATCAAATATGTAACATTCTTTCATTTATGAGCCTAAAGCAGAGAAGAGTCTTACTGGAAAAACATTATGCCAATTACAACATTATCACCACACCTATAATCTGAAATGAAAATCTGTTACAAAAATATGCAGTCGTGGATGAATGTGGGCTCACTTACTGACCAATGTGTATGTTTCATATGATTATGTCTTACCTTTTGGGTTTTGGGTTTGCTTTTCGTGTATCGTGTAATTGATATGAATGTAGACGTGTAtcgtgtaattgatgtgtatatagatgtgcaTTGTGTAATtggtgtgtatatagatgtgcattgtgtaattgatgtgtatatagatgtgcaTTGTGTAATTGGTGTGTATATAAATGTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247677 lncRNA downstream 89950 3545980 ~ 3546966 (-) True G217387
TU247662 lncRNA downstream 104708 3529588 ~ 3532208 (-) True G217374
TU247629 lncRNA downstream 146063 3489028 ~ 3490853 (-) True G217348
TU247630 lncRNA downstream 152817 3481670 ~ 3484099 (-) True G217349
TU247625 lncRNA downstream 161306 3474086 ~ 3475610 (-) True G217344
TU247770 lncRNA upstream 62650 3706954 ~ 3707763 (-) True G217469
TU247843 lncRNA upstream 192826 3837130 ~ 3837331 (-) True G217539
TU247850 lncRNA upstream 199791 3844095 ~ 3844517 (-) True G217543
TU247982 lncRNA upstream 234845 3879149 ~ 3879388 (-) True G217652
TU247984 lncRNA upstream 241425 3885729 ~ 3886023 (-) True G217654
XM_036966054.1 mRNA downstream 11816 3621822 ~ 3625100 (-) False LOC110507312
XM_036966049.1 mRNA downstream 11823 3621822 ~ 3625093 (-) False LOC110507312
XM_036966041.1 mRNA downstream 11833 3621824 ~ 3625083 (-) True LOC110507312
XR_005040124.1 mRNA downstream 398897 3237475 ~ 3238019 (-) True LOC118944808
XM_021586699.2 mRNA downstream 473993 3152009 ~ 3162923 (-) False LOC110506836
XM_021587285.2 mRNA upstream 75396 3719700 ~ 3725689 (-) False LOC110507329
XM_021587252.2 mRNA upstream 75396 3719700 ~ 3725695 (-) False LOC110507329
XM_021587267.2 mRNA upstream 75396 3719700 ~ 3725695 (-) False LOC110507329
XM_021587276.2 mRNA upstream 75396 3719700 ~ 3725695 (-) True LOC110507329
XM_036966137.1 mRNA upstream 348710 3993014 ~ 3998119 (-) True LOC110506742
TU247540 other downstream 298336 3338186 ~ 3338580 (-) True G217261
TU247125 other downstream 577172 3046005 ~ 3059744 (-) True G216902
TU246996 other downstream 898449 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 1511564 2124176 ~ 2125352 (-) True G216059
TU246052 other downstream 1515059 2121203 ~ 2121857 (-) True G216066
TU247757 other upstream 42098 3686402 ~ 3689304 (-) True G217459
TU248501 other upstream 794792 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 794792 4439096 ~ 4440437 (-) True G218073
TU249887 other upstream 894358 4538662 ~ 4540441 (-) True LOC118944829
TU249925 other upstream 999666 4643970 ~ 4648803 (-) True LOC118944839

Expression Profile