RNA id: TU248009


Basic Information

Item Value
RNA id TU248009
length 1122
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G217667
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 3989368 ~ 3990519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtcatacaactctccttccgttttCTCCAAttactcttaaatgcaagtaaactaaatgcatgctcttcaaccgatcactgcccgcacctgcccgcctgtctagcatcactactctggacggttctgactgagaatatgtggacaactacaaatacctaggtgtctggttagactgtaaactctccttccagactcattaaGACACATTAAGcacctccaatccaaaattaagtctagaatcggcttcctatttcgtaaacaaagcatccttcactcattctggcaaaaataccctcgtaaaactgactatcctaccgatccttgactttggcgatgtcatttacaaaatagcttccaacccactactcagcaaattggatgcaatctatcacagtgccatccgttttgtcaccaaagcccatgtactacccaccactgcgacctgtatgatctcgttggcttgccctcgcttcatattcgtctccaaacccactggctccaggtcatctataagtctttgctaagtaaagcccccccttatctcagctcactggtcaccatagcagcactcacccatagcacacactccagcaggtgtatttcactggtcaccccctaagccaattcctcctttggctgcctttccttccagttctctgctgccaatgactggaacgaattgcaaaagtcactgaagctggagactcatatctccctctctaactttaaccatcagctgtcagagcagcttgccgatcattgcacctgtacatagcccatctgtaaaaagcCCATCCAACTATCTCACCcccatatttttatttatttatttgtgctcctttgcaccctagtatctctacttgcacattcatcttctgcacatctatcactccagtgtttaattgctaaattgtaattacttcaccactacggcctatttattgccttacgtccctaatcttacctcgtttgcacacactgtagacttttctattgtgttattgactgtatgtttgtttattccatgtgtaactctgtgttgcattgctatgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcatctggcctacctagttaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247999 lncRNA downstream 20918 3923194 ~ 3968450 (-) False G217662
TU248024 lncRNA downstream 38631 3943641 ~ 3950737 (-) True G217678
TU247984 lncRNA downstream 103345 3885729 ~ 3886023 (-) True G217654
TU247982 lncRNA downstream 109980 3879149 ~ 3879388 (-) True G217652
TU247850 lncRNA downstream 144851 3844095 ~ 3844517 (-) True G217543
TU248078 lncRNA upstream 61411 4051930 ~ 4052145 (-) True G217729
TU248082 lncRNA upstream 67569 4058088 ~ 4058381 (-) True G217733
TU248083 lncRNA upstream 70231 4060750 ~ 4061032 (-) True G217734
TU248092 lncRNA upstream 77748 4068267 ~ 4068540 (-) True G217743
TU248093 lncRNA upstream 78602 4069121 ~ 4069340 (-) True G217744
XM_021587252.2 mRNA downstream 263673 3719700 ~ 3725695 (-) False LOC110507329
XM_021587267.2 mRNA downstream 263673 3719700 ~ 3725695 (-) False LOC110507329
XM_021587276.2 mRNA downstream 263673 3719700 ~ 3725695 (-) True LOC110507329
XM_021587285.2 mRNA downstream 263679 3719700 ~ 3725689 (-) False LOC110507329
XM_036966041.1 mRNA downstream 364285 3621824 ~ 3625083 (-) True LOC110507312
XM_036966137.1 mRNA upstream 2495 3993014 ~ 3998119 (-) True LOC110506742
XM_036966141.1 mRNA upstream 38573 4029092 ~ 4039160 (-) True LOC110506736
XM_036966148.1 mRNA upstream 144787 4135306 ~ 4354125 (-) False LOC110505077
XM_036966144.1 mRNA upstream 144787 4135306 ~ 4354126 (-) False LOC110505077
XM_036966152.1 mRNA upstream 253129 4243648 ~ 4354126 (-) True LOC110505077
TU247757 other downstream 300064 3686402 ~ 3689304 (-) True G217459
TU247540 other downstream 650788 3338186 ~ 3338580 (-) True G217261
TU247125 other downstream 929624 3046005 ~ 3059744 (-) True G216902
TU246996 other downstream 1250901 2736861 ~ 2738467 (-) True G216811
TU246045 other downstream 1864016 2124176 ~ 2125352 (-) True G216059
TU248501 other upstream 448577 4439096 ~ 4440061 (-) False G218073
TU248502 other upstream 448577 4439096 ~ 4440437 (-) True G218073
TU249887 other upstream 548143 4538662 ~ 4540441 (-) True LOC118944829
TU249925 other upstream 653451 4643970 ~ 4648803 (-) True LOC118944839
TU250017 other upstream 779831 4770350 ~ 4772051 (-) False G219200

Expression Profile